Gene annotation
Transcriptome id Sobic.001G329400.1
Synonym Sb01g031850
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
DUF1230 domain containing protein, expressed
UniProt C5WVL4
Pfam PF06799
Panther DB PTHR34214 PTHR34214:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G67370 : Protein of unknown function (DUF1230)
RAP-DB (Rice) LOC_Os03g32490.1 : DUF1230 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a052230 , Zm00025a001526 , Zm00025a003074 , Zm00025a026232 , Zm00025a026141
Brachypodium KQK14379
Barley HORVU3Hr1G050080.1 , HORVU3Hr1G050080.2 , HORVU3Hr1G050080.3 , HORVU3Hr1G050080.4 , HORVU3Hr1G050080.5 , HORVU3Hr1G050080.6 , HORVU3Hr1G050080.8
Wheat TraesCS3D02G210800 , TraesCS3B02G236600 , TraesCS3A02G207900 , TraesCS3A02G207900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
2 Sobic.007G161500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PGR5, putative, expressed -
3 Sobic.006G244000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed K17471: sulfate transporter 3
4 Sobic.003G127800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.009G129300 heat shock protein DnaJ, putative, expressed -
6 Sobic.007G140800 Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase)
7 Sobic.004G283100 -(PubMedID : 26465154)@expressed protein -
8 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
9 Sobic.009G104800 AMP deaminase, putative, expressed K01490: AMP deaminase
10 Sobic.004G125700 isochorismatase family protein, putative, expressed -
11 Sobic.004G305800 expressed protein -
12 Sobic.005G056400 Fructose-bisphosphate aldolase(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Fructose-bisphosphate aldolase, putative (Os)"(PubMedID : 27208977)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
13 Sobic.004G154200 expressed protein -
14 Sobic.001G134100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-AMP-activated protein kinase-related, putative, expressed -
15 Sobic.003G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
16 Sobic.003G367500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
17 Sobic.007G142200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
18 Sobic.003G431900 -(PubMedID : 26976818)@expressed protein K07562: nonsense-mediated mRNA decay protein 3
19 Sobic.005G231500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA-type ATPase family protein, putative, expressed -
20 Sobic.006G057866 - K12129: pseudo-response regulator 7


Gene co-expression network
sample Sobic001G329400 Sobic001G329400 Sobic003G024300 Sobic003G024300 Sobic001G329400--Sobic003G024300 Sobic007G161500 Sobic007G161500 Sobic001G329400--Sobic007G161500 Sobic006G244000 Sobic006G244000 Sobic001G329400--Sobic006G244000 Sobic003G127800 Sobic003G127800 Sobic001G329400--Sobic003G127800 Sobic009G129300 Sobic009G129300 Sobic001G329400--Sobic009G129300 Sobic007G140800 Sobic007G140800 Sobic001G329400--Sobic007G140800 Sobic004G283100 Sobic004G283100 Sobic001G329400--Sobic004G283100 Sobic001G491000 Sobic001G491000 Sobic001G329400--Sobic001G491000 Sobic009G104800 Sobic009G104800 Sobic001G329400--Sobic009G104800 Sobic007G009200 Sobic007G009200 Sobic003G024300--Sobic007G009200 Sobic006G077400 Sobic006G077400 Sobic003G024300--Sobic006G077400 Sobic003G024300--Sobic001G329400 Sobic003G024300--Sobic001G491000 Sobic003G024300--Sobic009G104800 Sobic003G398800 Sobic003G398800 Sobic003G024300--Sobic003G398800 Sobic004G125700 Sobic004G125700 Sobic003G024300--Sobic004G125700 Sobic003G024300--Sobic007G161500 Sobic010G201700 Sobic010G201700 Sobic003G024300--Sobic010G201700 Sobic005G056400 Sobic005G056400 Sobic007G161500--Sobic005G056400 Sobic007G161500--Sobic003G127800 Sobic010G188300 Sobic010G188300 Sobic007G161500--Sobic010G188300 Sobic007G161500--Sobic001G329400 Sobic003G370000 Sobic003G370000 Sobic007G161500--Sobic003G370000 Sobic007G161500--Sobic001G491000 Sobic001G289500 Sobic001G289500 Sobic007G161500--Sobic001G289500 Sobic004G305800 Sobic004G305800 Sobic007G161500--Sobic004G305800 Sobic007G161500--Sobic003G024300 Sobic006G244000--Sobic001G329400 Sobic009G048900 Sobic009G048900 Sobic006G244000--Sobic009G048900 Sobic003G256700 Sobic003G256700 Sobic006G244000--Sobic003G256700 Sobic006G244000--Sobic009G104800 Sobic008G104601 Sobic008G104601 Sobic006G244000--Sobic008G104601 Sobic006G244000--Sobic004G125700 Sobic003G431900 Sobic003G431900 Sobic006G244000--Sobic003G431900 Sobic001G406000 Sobic001G406000 Sobic006G244000--Sobic001G406000 Sobic001G134100 Sobic001G134100 Sobic006G244000--Sobic001G134100 Sobic003G127800--Sobic007G161500 Sobic004G059800 Sobic004G059800 Sobic003G127800--Sobic004G059800 Sobic010G039500 Sobic010G039500 Sobic003G127800--Sobic010G039500 Sobic003G127800--Sobic001G491000 Sobic003G127800--Sobic009G129300 Sobic003G127800--Sobic005G056400 Sobic003G127800--Sobic001G329400 Sobic003G367500 Sobic003G367500 Sobic003G127800--Sobic003G367500 Sobic006G153400 Sobic006G153400 Sobic003G127800--Sobic006G153400 Sobic009G129300--Sobic001G491000 Sobic010G181300 Sobic010G181300 Sobic009G129300--Sobic010G181300 Sobic009G129300--Sobic003G398800 Sobic009G129300--Sobic003G127800 Sobic009G129300--Sobic004G305800 Sobic006G238200 Sobic006G238200 Sobic009G129300--Sobic006G238200 Sobic002G275300 Sobic002G275300 Sobic009G129300--Sobic002G275300 Sobic004G268000 Sobic004G268000 Sobic009G129300--Sobic004G268000 Sobic009G129300--Sobic007G161500 Sobic007G140800--Sobic006G077400 Sobic003G303700 Sobic003G303700 Sobic007G140800--Sobic003G303700 Sobic007G140800--Sobic010G201700 Sobic007G140800--Sobic003G024300 Sobic010G153900 Sobic010G153900 Sobic007G140800--Sobic010G153900 Sobic007G140800--Sobic001G329400 Sobic007G140800--Sobic007G009200 Sobic007G140800--Sobic004G125700 Sobic009G237100 Sobic009G237100 Sobic007G140800--Sobic009G237100 Sobic004G272100 Sobic004G272100 Sobic004G283100--Sobic004G272100 Sobic008G053200 Sobic008G053200 Sobic004G283100--Sobic008G053200 Sobic004G283100--Sobic004G305800 Sobic004G238600 Sobic004G238600 Sobic004G283100--Sobic004G238600 Sobic004G283100--Sobic010G201700 Sobic004G283100--Sobic001G329400 Sobic002G370600 Sobic002G370600 Sobic004G283100--Sobic002G370600 Sobic009G043000 Sobic009G043000 Sobic004G283100--Sobic009G043000 Sobic004G283100--Sobic009G129300 Sobic001G491000--Sobic006G238200 Sobic001G491000--Sobic010G181300 Sobic001G100000 Sobic001G100000 Sobic001G491000--Sobic001G100000 Sobic001G491000--Sobic002G275300 Sobic001G491000--Sobic001G289500 Sobic001G491000--Sobic009G129300 Sobic001G491000--Sobic002G370600 Sobic001G491000--Sobic009G237100 Sobic001G491000--Sobic004G305800 Sobic009G104800--Sobic004G125700 Sobic009G104800--Sobic003G024300 Sobic009G104800--Sobic001G329400 Sobic009G104800--Sobic006G077400 Sobic009G104800--Sobic006G244000 Sobic009G104800--Sobic007G140800 Sobic009G104800--Sobic003G256700 Sobic009G104800--Sobic007G161500 Sobic010G095000 Sobic010G095000 Sobic009G104800--Sobic010G095000
Octagon: transcription factors


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