Gene annotation
Transcriptome id Sobic.007G140800.1
Synonym FAD6, SFD4, Sb07g021640, FADC
Functional annotation Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At) (PubMedID : 27208977)
omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed
UniProt C5YLK7
Pfam PF00487
Panther DB PTHR32100 PTHR32100:SF10
NCBI CDD -
KEGG Orthology K10255; FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase)
Gene Ontology GO:0006629; lipid metabolic process


Orthologs (automatic annotation)
TAIR AT4G30950 : fatty acid desaturase 6
RAP-DB (Rice) LOC_Os08g34220.1 : omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a005850
Brachypodium KQJ98433
Barley HORVU2Hr1G035220.1 , HORVU2Hr1G035220.2 , HORVU2Hr1G035220.3 , HORVU2Hr1G035220.4 , HORVU2Hr1G035220.5 , HORVU2Hr1G035220.6 , HORVU2Hr1G035220.7
Wheat TraesCS2D02G194000 , TraesCS2A02G193800 , TraesCS2A02G193800 , TraesCS2B02G213000 , TraesCS2B02G213000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G077400 PAP fibrillin family domain containing protein, expressed -
2 Sobic.003G303700 Protein thylakoid membrane phosphoprotein 14 kda (Os)(PubMedID : 27208977)@expressed protein -
3 Sobic.010G201700 GA16396-PA, putative, expressed -
4 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
5 Sobic.010G153900 Spermidine synthase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@"OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659935)@spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
6 Sobic.001G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
7 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase
8 Sobic.004G125700 isochorismatase family protein, putative, expressed -
9 Sobic.009G237100 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
10 Sobic.001G102800 expressed protein -
11 Sobic.004G274100 expressed protein -
12 Sobic.009G113800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os5bglu20 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
13 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
14 Sobic.006G130300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
15 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
16 Sobic.001G100000 glucose-1-phosphate adenylyltransferase large subunit, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
17 Sobic.009G043000 thioredoxin, putative, expressed -
18 Sobic.009G104800 AMP deaminase, putative, expressed K01490: AMP deaminase
19 Sobic.001G129000 DnaK family protein, putative, expressed -
20 Sobic.008G021300 Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G140800 Sobic007G140800 Sobic006G077400 Sobic006G077400 Sobic007G140800--Sobic006G077400 Sobic003G303700 Sobic003G303700 Sobic007G140800--Sobic003G303700 Sobic010G201700 Sobic010G201700 Sobic007G140800--Sobic010G201700 Sobic003G024300 Sobic003G024300 Sobic007G140800--Sobic003G024300 Sobic010G153900 Sobic010G153900 Sobic007G140800--Sobic010G153900 Sobic001G329400 Sobic001G329400 Sobic007G140800--Sobic001G329400 Sobic007G009200 Sobic007G009200 Sobic007G140800--Sobic007G009200 Sobic004G125700 Sobic004G125700 Sobic007G140800--Sobic004G125700 Sobic009G237100 Sobic009G237100 Sobic007G140800--Sobic009G237100 Sobic006G077400--Sobic003G024300 Sobic007G225500 Sobic007G225500 Sobic006G077400--Sobic007G225500 Sobic006G077400--Sobic007G009200 Sobic005G200200 Sobic005G200200 Sobic006G077400--Sobic005G200200 Sobic006G077400--Sobic007G140800 Sobic001G491000 Sobic001G491000 Sobic006G077400--Sobic001G491000 Sobic006G077400--Sobic010G201700 Sobic010G035400 Sobic010G035400 Sobic006G077400--Sobic010G035400 Sobic006G238200 Sobic006G238200 Sobic006G077400--Sobic006G238200 Sobic008G021300 Sobic008G021300 Sobic003G303700--Sobic008G021300 Sobic003G303700--Sobic010G201700 Sobic003G303700--Sobic007G140800 Sobic002G152700 Sobic002G152700 Sobic003G303700--Sobic002G152700 Sobic009G043000 Sobic009G043000 Sobic003G303700--Sobic009G043000 Sobic001G102800 Sobic001G102800 Sobic003G303700--Sobic001G102800 Sobic004G272100 Sobic004G272100 Sobic003G303700--Sobic004G272100 Sobic004G274100 Sobic004G274100 Sobic003G303700--Sobic004G274100 Sobic003G303700--Sobic010G153900 Sobic010G201700--Sobic009G043000 Sobic010G201700--Sobic004G272100 Sobic003G002300 Sobic003G002300 Sobic010G201700--Sobic003G002300 Sobic010G201700--Sobic001G102800 Sobic001G519800 Sobic001G519800 Sobic010G201700--Sobic001G519800 Sobic010G201700--Sobic007G225500 Sobic008G102000 Sobic008G102000 Sobic010G201700--Sobic008G102000 Sobic006G207800 Sobic006G207800 Sobic010G201700--Sobic006G207800 Sobic004G308700 Sobic004G308700 Sobic010G201700--Sobic004G308700 Sobic003G024300--Sobic007G009200 Sobic003G024300--Sobic006G077400 Sobic003G024300--Sobic001G329400 Sobic003G024300--Sobic001G491000 Sobic009G104800 Sobic009G104800 Sobic003G024300--Sobic009G104800 Sobic003G398800 Sobic003G398800 Sobic003G024300--Sobic003G398800 Sobic003G024300--Sobic004G125700 Sobic007G161500 Sobic007G161500 Sobic003G024300--Sobic007G161500 Sobic003G024300--Sobic010G201700 Sobic010G153900--Sobic007G140800 Sobic008G188600 Sobic008G188600 Sobic010G153900--Sobic008G188600 Sobic010G153900--Sobic009G043000 Sobic010G153900--Sobic010G201700 Sobic010G153900--Sobic003G303700 Sobic010G095000 Sobic010G095000 Sobic010G153900--Sobic010G095000 Sobic010G153900--Sobic006G207800 Sobic003G241900 Sobic003G241900 Sobic010G153900--Sobic003G241900 Sobic001G020100 Sobic001G020100 Sobic010G153900--Sobic001G020100 Sobic001G329400--Sobic003G024300 Sobic001G329400--Sobic007G161500 Sobic006G244000 Sobic006G244000 Sobic001G329400--Sobic006G244000 Sobic003G127800 Sobic003G127800 Sobic001G329400--Sobic003G127800 Sobic009G129300 Sobic009G129300 Sobic001G329400--Sobic009G129300 Sobic001G329400--Sobic007G140800 Sobic004G283100 Sobic004G283100 Sobic001G329400--Sobic004G283100 Sobic001G329400--Sobic001G491000 Sobic001G329400--Sobic009G104800 Sobic007G009200--Sobic009G237100 Sobic007G009200--Sobic003G024300 Sobic007G009200--Sobic006G207800 Sobic007G009200--Sobic003G398800 Sobic007G009200--Sobic006G238200 Sobic007G009200--Sobic001G102800 Sobic007G009200--Sobic006G077400 Sobic007G009200--Sobic010G201700 Sobic007G009200--Sobic010G035400 Sobic004G125700--Sobic009G104800 Sobic004G125700--Sobic003G024300 Sobic004G125700--Sobic007G140800 Sobic004G125700--Sobic001G329400 Sobic004G125700--Sobic006G077400 Sobic004G125700--Sobic010G201700 Sobic003G431900 Sobic003G431900 Sobic004G125700--Sobic003G431900 Sobic004G125700--Sobic006G244000 Sobic004G125700--Sobic004G272100 Sobic009G237100--Sobic007G009200 Sobic009G237100--Sobic006G207800 Sobic009G237100--Sobic006G238200 Sobic001G100000 Sobic001G100000 Sobic009G237100--Sobic001G100000 Sobic009G237100--Sobic001G491000 Sobic002G275300 Sobic002G275300 Sobic009G237100--Sobic002G275300 Sobic009G237100--Sobic010G035400 Sobic009G237100--Sobic001G102800 Sobic010G181300 Sobic010G181300 Sobic009G237100--Sobic010G181300
Octagon: transcription factors


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