Gene annotation
| Transcriptome id | Sobic.009G043000.2,Sobic.009G043000.1 |
|---|---|
| Synonym | Sb09g003630, ATF2, TRXF2 |
| Functional annotation | thioredoxin, putative, expressed |
| UniProt | A0A1B6P6N7 , A0A1B6P6P7 |
| Pfam | PF00085 |
| Panther DB | PTHR10438 PTHR10438:SF258 |
| NCBI CDD | KOG0907; Thioredoxin |
| KEGG Orthology | - |
| Gene Ontology | GO:0015035; protein disulfide oxidoreductase activity GO:0006662glycerol ether metabolic process |
Orthologs (automatic annotation)
| TAIR | AT5G16400 : thioredoxin F2 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g68480.1 : thioredoxin, putative, expressed |
| MaizeGDB (Corn) | Zm00025a038089 , Zm00025a055400 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.009G043000 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G201700 | GA16396-PA, putative, expressed | - |
| 2 | Sobic.003G002300 | Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed | K15283: solute carrier family 35, member E1 |
| 3 | Sobic.008G102000 | Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed | - |
| 4 | Sobic.001G102800 | expressed protein | - |
| 5 | Sobic.007G225500 | expressed protein | - |
| 6 | Sobic.004G272100 | phosphoribulokinase/Uridine kinase family protein, expressed | K00855: PRK, phosphoribulokinase |
| 7 | Sobic.006G207800 | Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed | - |
| 8 | Sobic.009G140600 | hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 9 | Sobic.001G519800 | glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 10 | Sobic.007G052400 | rubredoxin family protein, putative, expressed | - |
| 11 | Sobic.007G173800 | uncharacterized protein ycf39, putative, expressed | - |
| 12 | Sobic.002G051100 | Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed | K01807: ribose 5-phosphate isomerase A |
| 13 | Sobic.010G005500 | ferredoxin--NADP reductase, chloroplast precursor, putative, expressed | K02641: ferredoxin--NADP+ reductase |
| 14 | Sobic.006G272900 | peroxidase activity(PubMedID : 29491869)@glutathione peroxidase, putative, expressed | K00432: gpx, btuE, glutathione peroxidase |
| 15 | Sobic.008G188600 | glyoxalase family protein, putative, expressed | - |
| 16 | Sobic.009G059300 | haloacid dehalogenase-like hydrolase family protein, putative, expressed | - |
| 17 | Sobic.002G370600 | - | - |
| 18 | Sobic.008G171300 | methyltransferase domain containing protein, putative, expressed | K12502: VTE3, MPBQ/MSBQ methyltransferase |
| 19 | Sobic.003G303700 | Protein thylakoid membrane phosphoprotein 14 kda (Os)(PubMedID : 27208977)@expressed protein | - |
| 20 | Sobic.008G021300 | Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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