Gene annotation
| Transcriptome id | Sobic.006G272900.2 |
|---|---|
| Synonym | Sb06g033440, GPX6, PHGPX, ATGPX6, LSC803 |
| Functional annotation | peroxidase activity (PubMedID : 29491869) glutathione peroxidase, putative, expressed |
| UniProt | C5YAP1 |
| Pfam | PF00578 |
| Panther DB | PTHR11592 PTHR11592:SF37 |
| NCBI CDD | KOG1651; Glutathione peroxidase |
| KEGG Orthology | K00432; gpx, btuE, glutathione peroxidase |
| Gene Ontology | GO:0016491; oxidoreductase activity GO:0016209antioxidant activity GO:0006979response to oxidative stress GO:0004602glutathione peroxidase activity |
Orthologs (automatic annotation)
| TAIR | AT4G11600 : glutathione peroxidase 6 |
|---|---|
| RAP-DB (Rice) | LOC_Os04g46960.2 : glutathione peroxidase domain containing protein, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G021300 | Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed | - |
| 2 | Sobic.009G043000 | thioredoxin, putative, expressed | - |
| 3 | Sobic.010G005500 | ferredoxin--NADP reductase, chloroplast precursor, putative, expressed | K02641: ferredoxin--NADP+ reductase |
| 4 | Sobic.003G002300 | Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed | K15283: solute carrier family 35, member E1 |
| 5 | Sobic.002G152700 | rhodanese-like, putative, expressed | - |
| 6 | Sobic.010G201700 | GA16396-PA, putative, expressed | - |
| 7 | Sobic.003G387800 | unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed | - |
| 8 | Sobic.007G004800 | Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | K02639: ferredoxin |
| 9 | Sobic.001G102800 | expressed protein | - |
| 10 | Sobic.001G519800 | glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 11 | Sobic.007G052400 | rubredoxin family protein, putative, expressed | - |
| 12 | Sobic.004G272100 | phosphoribulokinase/Uridine kinase family protein, expressed | K00855: PRK, phosphoribulokinase |
| 13 | Sobic.009G125400 | FZL, putative, expressed | - |
| 14 | Sobic.009G140600 | hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 15 | Sobic.008G102000 | Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed | - |
| 16 | Sobic.010G160700 | PEPC(PubMedID : 19549309)@"C4 PTPC , photosynthetic C4 gene"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase 2(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphoenolpyruvate carboxylase, putative, expressed | K01595: phosphoenolpyruvate carboxylase |
| 17 | Sobic.007G207800 | thylakoid lumen protein, chloroplast precursor, putative, expressed | - |
| 18 | Sobic.007G071500 | photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed | K03541: photosystem II 10kDa protein |
| 19 | Sobic.003G303700 | Protein thylakoid membrane phosphoprotein 14 kda (Os)(PubMedID : 27208977)@expressed protein | - |
| 20 | Sobic.009G030900 | bundle sheath defective protein 2, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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