Gene annotation
| Transcriptome id | Sobic.010G005500.1 |
|---|---|
| Synonym | Sb10g000720, ATLFNR2, FNR2 |
| Functional annotation | ferredoxin--NADP reductase, chloroplast precursor, putative, expressed |
| UniProt | C5Z269 |
| Pfam | PF00970 PF00175 |
| Panther DB | PTHR19384 PTHR19384:SF82 |
| NCBI CDD | - |
| KEGG Orthology | K02641; ferredoxin--NADP+ reductase |
| Gene Ontology | GO:0016491; oxidoreductase activity |
Orthologs (automatic annotation)
| TAIR | AT1G20020 : ferredoxin-NADP(+)-oxidoreductase 2 |
|---|---|
| RAP-DB (Rice) | LOC_Os06g01850.1 : ferredoxin--NADP reductase, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a050303 , Zm00025a025927 , Zm00025a053751 , Zm00025a039088 |
| Brachypodium | KQJ92782 , KQK20033 |
| Barley | HORVU6Hr1G000620.4 , HORVU6Hr1G000620.1 , HORVU6Hr1G000620.2 , HORVU6Hr1G000620.3 |
| Wheat | TraesCS6A02G009200 , TraesCS6D02G012200 , TraesCS6B02G015000 |
| Populus | - |
JBrowse
| Sobic.010G005500 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G052400 | rubredoxin family protein, putative, expressed | - |
| 2 | Sobic.003G002300 | Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed | K15283: solute carrier family 35, member E1 |
| 3 | Sobic.009G030900 | bundle sheath defective protein 2, putative, expressed | - |
| 4 | Sobic.009G183700 | XP_002441313.1 plastidic phosphoglycerate kinase(PubMedID : 26904072)@phosphoglycerate kinase(PubMedID : 29017446)@phosphoglycerate kinase protein, putative, expressed | K00927: PGK, phosphoglycerate kinase |
| 5 | Sobic.002G277100 | -(PubMedID : 29017446)@triosephosphate isomerase, chloroplast precursor, putative, expressed | K01803: TPI, triosephosphate isomerase (TIM) |
| 6 | Sobic.003G387800 | unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed | - |
| 7 | Sobic.004G012900 | expressed protein | - |
| 8 | Sobic.010G277600 | - | - |
| 9 | Sobic.009G059300 | haloacid dehalogenase-like hydrolase family protein, putative, expressed | - |
| 10 | Sobic.010G160700 | PEPC(PubMedID : 19549309)@"C4 PTPC , photosynthetic C4 gene"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase 2(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphoenolpyruvate carboxylase, putative, expressed | K01595: phosphoenolpyruvate carboxylase |
| 11 | Sobic.009G043000 | thioredoxin, putative, expressed | - |
| 12 | Sobic.007G225500 | expressed protein | - |
| 13 | Sobic.008G171300 | methyltransferase domain containing protein, putative, expressed | K12502: VTE3, MPBQ/MSBQ methyltransferase |
| 14 | Sobic.009G140600 | hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 15 | Sobic.006G272900 | peroxidase activity(PubMedID : 29491869)@glutathione peroxidase, putative, expressed | K00432: gpx, btuE, glutathione peroxidase |
| 16 | Sobic.001G102800 | expressed protein | - |
| 17 | Sobic.002G152700 | rhodanese-like, putative, expressed | - |
| 18 | Sobic.001G405700 | - | - |
| 19 | Sobic.008G102000 | Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed | - |
| 20 | Sobic.007G004800 | Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | K02639: ferredoxin |
Gene co-expression network
Octagon: transcription factors
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