Gene annotation
| Transcriptome id | Sobic.001G102800.1 |
|---|---|
| Synonym | Sb01g009180 |
| Functional annotation | expressed protein |
| UniProt | C5WLY6 |
| Pfam | PF05479 |
| Panther DB | PTHR36327 PTHR36327:SF1 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0015979; photosynthesis GO:0009522photosystem I GO:0005516calmodulin binding |
Orthologs (automatic annotation)
| TAIR | AT1G49975 : - |
|---|---|
| RAP-DB (Rice) | LOC_Os03g52130.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a008017 |
| Brachypodium | KQK13376 |
| Barley | HORVU4Hr1G010270.11 , HORVU4Hr1G010270.9 |
| Wheat | TraesCS4A02G253200 , TraesCS4B02G062200 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G207800 | Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed | - |
| 2 | Sobic.001G519800 | glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 3 | Sobic.003G002300 | Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed | K15283: solute carrier family 35, member E1 |
| 4 | Sobic.010G201700 | GA16396-PA, putative, expressed | - |
| 5 | Sobic.009G043000 | thioredoxin, putative, expressed | - |
| 6 | Sobic.004G272100 | phosphoribulokinase/Uridine kinase family protein, expressed | K00855: PRK, phosphoribulokinase |
| 7 | Sobic.007G009200 | adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed | K00939: adk, adenylate kinase |
| 8 | Sobic.007G052400 | rubredoxin family protein, putative, expressed | - |
| 9 | Sobic.003G431700 | ferredoxin--NADP reductase, chloroplast precursor, putative, expressed | K02641: ferredoxin--NADP+ reductase |
| 10 | Sobic.003G387100 | membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed | K03969: phage shock protein A |
| 11 | Sobic.004G308700 | photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08911: light-harvesting complex I chlorophyll a/b binding protein 5 |
| 12 | Sobic.002G051100 | Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed | K01807: ribose 5-phosphate isomerase A |
| 13 | Sobic.007G225500 | expressed protein | - |
| 14 | Sobic.007G004800 | Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | K02639: ferredoxin |
| 15 | Sobic.004G331700 | aspartate aminotransferase 5(PubMedID : 26465154)@-(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed | K00811: aspartate aminotransferase, chloroplastic |
| 16 | Sobic.009G237100 | -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed | K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7 |
| 17 | Sobic.009G059300 | haloacid dehalogenase-like hydrolase family protein, putative, expressed | - |
| 18 | Sobic.008G021300 | Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed | - |
| 19 | Sobic.003G303700 | Protein thylakoid membrane phosphoprotein 14 kda (Os)(PubMedID : 27208977)@expressed protein | - |
| 20 | Sobic.010G005500 | ferredoxin--NADP reductase, chloroplast precursor, putative, expressed | K02641: ferredoxin--NADP+ reductase |
Gene co-expression network
Octagon: transcription factors
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