Gene annotation
| Transcriptome id | Sobic.004G331700.1,Sobic.004G331700.2 |
|---|---|
| Synonym | AAT3, ASP5, ATAAT1, Sb04g036060, AAT3, ATAAT1 |
| Functional annotation | aspartate aminotransferase 5 (PubMedID : 26465154) - (PubMedID : 26976818) aminotransferase, classes I and II, domain containing protein, expressed |
| UniProt | A0A194YSX5 , A0A194YSW3 |
| Pfam | PF00155 |
| Panther DB | PTHR11879 PTHR11879:SF1 |
| NCBI CDD | - |
| KEGG Orthology | K00811; aspartate aminotransferase, chloroplastic |
| Gene Ontology | GO:0009058; biosynthetic process GO:0008483transaminase activity GO:0006520cellular amino acid metabolic process |
Orthologs (automatic annotation)
| TAIR | AT4G31990 : aspartate aminotransferase 5 |
|---|---|
| RAP-DB (Rice) | LOC_Os02g55420.1 : aminotransferase, classes I and II, domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a022482 |
| Brachypodium | KQK01164 |
| Barley | HORVU0Hr1G017370.1 , HORVU0Hr1G017370.2 , HORVU0Hr1G017370.3 , HORVU0Hr1G017370.4 , HORVU0Hr1G017370.5 , HORVU0Hr1G017370.6 , HORVU0Hr1G017370.7 |
| Wheat | TraesCS6B02G393600 , TraesCS6A02G360700 , TraesCS6A02G360700 , TraesCS6D02G344200 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G102800 | expressed protein | - |
| 2 | Sobic.006G207800 | Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed | - |
| 3 | Sobic.001G309300 | expressed protein | - |
| 4 | Sobic.009G237100 | -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed | K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7 |
| 5 | Sobic.007G052400 | rubredoxin family protein, putative, expressed | - |
| 6 | Sobic.007G009200 | adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed | K00939: adk, adenylate kinase |
| 7 | Sobic.010G005500 | ferredoxin--NADP reductase, chloroplast precursor, putative, expressed | K02641: ferredoxin--NADP+ reductase |
| 8 | Sobic.003G387100 | membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed | K03969: phage shock protein A |
| 9 | Sobic.009G059300 | haloacid dehalogenase-like hydrolase family protein, putative, expressed | - |
| 10 | Sobic.010G035400 | expressed protein | - |
| 11 | Sobic.002G277100 | -(PubMedID : 29017446)@triosephosphate isomerase, chloroplast precursor, putative, expressed | K01803: TPI, triosephosphate isomerase (TIM) |
| 12 | Sobic.007G225500 | expressed protein | - |
| 13 | Sobic.003G002300 | Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed | K15283: solute carrier family 35, member E1 |
| 14 | Sobic.004G012900 | expressed protein | - |
| 15 | Sobic.008G073100 | uncharacterized protein ycf45, putative, expressed | - |
| 16 | Sobic.004G336000 | chaperone protein dnaJ, putative, expressed | K03686: molecular chaperone DnaJ |
| 17 | Sobic.004G336200 | OsClp6 - Putative Clp protease homologue, expressed | K01358: clpP, ATP-dependent Clp protease, protease subunit |
| 18 | Sobic.009G113800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os5bglu20 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed | K01188: beta-glucosidase |
| 19 | Sobic.002G401800 | bifunctional thioredoxin reductase/thioredoxin, putative, expressed | K00384: trxB, thioredoxin reductase (NADPH) |
| 20 | Sobic.003G160800 | tetratricopeptide repeat domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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