Gene annotation
Transcriptome id Sobic.004G012900.1
Synonym Sb04g001270, LPA3
Functional annotation expressed protein
UniProt C5XSC0
Pfam PF09353
Panther DB PTHR34051 PTHR34051:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G73060 : Low PSII Accumulation 3
RAP-DB (Rice) LOC_Os02g02520.1 : expressed protein
MaizeGDB (Corn) Zm00025a018718
Brachypodium KQJ92910
Barley HORVU6Hr1G009480.7 , HORVU6Hr1G009480.6 , HORVU6Hr1G009480.5 , HORVU6Hr1G009480.4 , HORVU6Hr1G009480.3 , HORVU6Hr1G009480.2 , HORVU6Hr1G009480.1 , HORVU6Hr1G009480.9 , HORVU6Hr1G009480.8 , HORVU6Hr1G009480.19 , HORVU6Hr1G009480.18 , HORVU6Hr1G009480.17 , HORVU6Hr1G009480.16 , HORVU6Hr1G009480.15 , HORVU6Hr1G009480.14 , HORVU6Hr1G009480.13 , HORVU6Hr1G009480.12 , HORVU6Hr1G009480.11 , HORVU6Hr1G009480.10 , HORVU6Hr1G009480.20
Wheat TraesCS6D02G054100 , TraesCS6A02G046900
Populus -


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cDNA sequences
Sobic.004G012900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G052400 rubredoxin family protein, putative, expressed -
2 Sobic.002G233700 -(PubMedID : 26976818)@dicarboxylate transporter 2(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
3 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
4 Sobic.010G005500 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
5 Sobic.003G378600 "oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor"(PubMedID : 26465154)@NADH dehydrogenase I subunit N, putative, expressed -
6 Sobic.009G059300 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
7 Sobic.010G277600 - -
8 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
9 Sobic.008G171300 methyltransferase domain containing protein, putative, expressed K12502: VTE3, MPBQ/MSBQ methyltransferase
10 Sobic.009G140600 hydrolase, alpha/beta fold family domain containing protein, expressed -
11 Sobic.008G073100 uncharacterized protein ycf45, putative, expressed -
12 Sobic.003G077400 peptidase M50 family protein, putative, expressed -
13 Sobic.001G005200 expressed protein -
14 Sobic.001G122300 PAP fibrillin family domain containing protein, expressed -
15 Sobic.003G002300 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed K15283: solute carrier family 35, member E1
16 Sobic.009G030900 bundle sheath defective protein 2, putative, expressed -
17 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
18 Sobic.008G102000 Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed -
19 Sobic.008G172700 OsDegp15 - Putative Deg protease homologue, expressed -
20 Sobic.002G112400 PGR5-LIKE A(PubMedID : 26465154)@expressed protein -


Gene co-expression network
sample Sobic004G012900 Sobic004G012900 Sobic007G052400 Sobic007G052400 Sobic004G012900--Sobic007G052400 Sobic002G233700 Sobic002G233700 Sobic004G012900--Sobic002G233700 Sobic002G401800 Sobic002G401800 Sobic004G012900--Sobic002G401800 Sobic010G005500 Sobic010G005500 Sobic004G012900--Sobic010G005500 Sobic003G378600 Sobic003G378600 Sobic004G012900--Sobic003G378600 Sobic009G059300 Sobic009G059300 Sobic004G012900--Sobic009G059300 Sobic010G277600 Sobic010G277600 Sobic004G012900--Sobic010G277600 Sobic003G387100 Sobic003G387100 Sobic004G012900--Sobic003G387100 Sobic008G171300 Sobic008G171300 Sobic004G012900--Sobic008G171300 Sobic007G052400--Sobic010G005500 Sobic003G002300 Sobic003G002300 Sobic007G052400--Sobic003G002300 Sobic007G052400--Sobic004G012900 Sobic007G052400--Sobic008G171300 Sobic007G225500 Sobic007G225500 Sobic007G052400--Sobic007G225500 Sobic009G183700 Sobic009G183700 Sobic007G052400--Sobic009G183700 Sobic009G030900 Sobic009G030900 Sobic007G052400--Sobic009G030900 Sobic008G102000 Sobic008G102000 Sobic007G052400--Sobic008G102000 Sobic007G052400--Sobic002G233700 Sobic002G233700--Sobic008G171300 Sobic002G233700--Sobic004G012900 Sobic004G303200 Sobic004G303200 Sobic002G233700--Sobic004G303200 Sobic002G233700--Sobic007G052400 Sobic002G233700--Sobic007G225500 Sobic001G005200 Sobic001G005200 Sobic002G233700--Sobic001G005200 Sobic002G233700--Sobic003G002300 Sobic002G233700--Sobic002G401800 Sobic002G233700--Sobic003G378600 Sobic004G336200 Sobic004G336200 Sobic002G401800--Sobic004G336200 Sobic008G073100 Sobic008G073100 Sobic002G401800--Sobic008G073100 Sobic002G405100 Sobic002G405100 Sobic002G401800--Sobic002G405100 Sobic002G401800--Sobic004G012900 Sobic002G272100 Sobic002G272100 Sobic002G401800--Sobic002G272100 Sobic005G110400 Sobic005G110400 Sobic002G401800--Sobic005G110400 Sobic005G100300 Sobic005G100300 Sobic002G401800--Sobic005G100300 Sobic001G368500 Sobic001G368500 Sobic002G401800--Sobic001G368500 Sobic003G077400 Sobic003G077400 Sobic002G401800--Sobic003G077400 Sobic010G005500--Sobic007G052400 Sobic010G005500--Sobic003G002300 Sobic010G005500--Sobic009G030900 Sobic010G005500--Sobic009G183700 Sobic002G277100 Sobic002G277100 Sobic010G005500--Sobic002G277100 Sobic003G387800 Sobic003G387800 Sobic010G005500--Sobic003G387800 Sobic010G005500--Sobic004G012900 Sobic010G005500--Sobic010G277600 Sobic010G005500--Sobic009G059300 Sobic009G140600 Sobic009G140600 Sobic003G378600--Sobic009G140600 Sobic003G378600--Sobic001G005200 Sobic003G378600--Sobic004G012900 Sobic003G378600--Sobic008G102000 Sobic001G122300 Sobic001G122300 Sobic003G378600--Sobic001G122300 Sobic004G239100 Sobic004G239100 Sobic003G378600--Sobic004G239100 Sobic004G359600 Sobic004G359600 Sobic003G378600--Sobic004G359600 Sobic003G378600--Sobic002G233700 Sobic008G172700 Sobic008G172700 Sobic003G378600--Sobic008G172700 Sobic009G059300--Sobic003G387100 Sobic009G059300--Sobic004G012900 Sobic009G059300--Sobic010G005500 Sobic006G207800 Sobic006G207800 Sobic009G059300--Sobic006G207800 Sobic009G059300--Sobic008G171300 Sobic001G309300 Sobic001G309300 Sobic009G059300--Sobic001G309300 Sobic009G059300--Sobic007G052400 Sobic009G059300--Sobic009G030900 Sobic009G059300--Sobic008G073100 Sobic010G277600--Sobic009G183700 Sobic010G277600--Sobic009G030900 Sobic010G277600--Sobic010G005500 Sobic010G277600--Sobic007G052400 Sobic010G277600--Sobic004G239100 Sobic010G277600--Sobic004G012900 Sobic010G277600--Sobic002G277100 Sobic007G004600 Sobic007G004600 Sobic010G277600--Sobic007G004600 Sobic007G173800 Sobic007G173800 Sobic010G277600--Sobic007G173800 Sobic003G387100--Sobic009G059300 Sobic003G387100--Sobic004G336200 Sobic003G387100--Sobic008G073100 Sobic003G387100--Sobic006G207800 Sobic003G160800 Sobic003G160800 Sobic003G387100--Sobic003G160800 Sobic003G387100--Sobic005G110400 Sobic003G387100--Sobic004G012900 Sobic003G412900 Sobic003G412900 Sobic003G387100--Sobic003G412900 Sobic010G035400 Sobic010G035400 Sobic003G387100--Sobic010G035400 Sobic008G171300--Sobic002G233700 Sobic008G171300--Sobic007G052400 Sobic008G171300--Sobic007G225500 Sobic008G171300--Sobic003G002300 Sobic008G171300--Sobic008G102000 Sobic008G171300--Sobic009G059300 Sobic008G171300--Sobic004G012900 Sobic008G171300--Sobic009G140600 Sobic008G171300--Sobic009G183700
Octagon: transcription factors


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