Gene annotation
Transcriptome id Sobic.003G387800.2,Sobic.003G387800.1
Synonym Sb03g042600
Functional annotation unknown (PubMedID : 29017446)
rhodanese-like domain containing protein, putative, expressed
UniProt A0A1W0W0W7 , C5XEU1
Pfam PF00581
Panther DB PTHR34209 PTHR34209:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G59780 : Rhodanese/Cell cycle control phosphatase superfamily protein
RAP-DB (Rice) LOC_Os01g67120.1 : rhodanese-like domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a026444
Brachypodium KQK11010 , KQK11011
Barley HORVU3Hr1G089650.7 , HORVU3Hr1G089650.6 , HORVU3Hr1G089650.5 , HORVU3Hr1G089650.4 , HORVU3Hr1G089650.3 , HORVU3Hr1G089650.2 , HORVU3Hr1G089650.1 , HORVU3Hr1G089650.8
Wheat TraesCS3A02G398500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G387800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
2 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
3 Sobic.003G002300 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed K15283: solute carrier family 35, member E1
4 Sobic.009G140600 hydrolase, alpha/beta fold family domain containing protein, expressed -
5 Sobic.010G005500 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
6 Sobic.009G030900 bundle sheath defective protein 2, putative, expressed -
7 Sobic.007G052400 rubredoxin family protein, putative, expressed -
8 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
9 Sobic.008G134800 shikimate kinase, putative, expressed -
10 Sobic.010G160700 PEPC(PubMedID : 19549309)@"C4 PTPC , photosynthetic C4 gene"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase 2(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
11 Sobic.009G183700 XP_002441313.1 plastidic phosphoglycerate kinase(PubMedID : 26904072)@phosphoglycerate kinase(PubMedID : 29017446)@phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
12 Sobic.002G051100 Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
13 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
14 Sobic.004G249800 expressed protein -
15 Sobic.007G223500 expressed protein -
16 Sobic.008G102000 Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed -
17 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
18 Sobic.007G207800 thylakoid lumen protein, chloroplast precursor, putative, expressed -
19 Sobic.004G012900 expressed protein -
20 Sobic.001G489000 NAD(P)-linked oxidoreductase superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@putativ eribonuclease P, putative, expressed -


Gene co-expression network
sample Sobic003G387800 Sobic003G387800 Sobic004G175500 Sobic004G175500 Sobic003G387800--Sobic004G175500 Sobic007G004800 Sobic007G004800 Sobic003G387800--Sobic007G004800 Sobic003G002300 Sobic003G002300 Sobic003G387800--Sobic003G002300 Sobic009G140600 Sobic009G140600 Sobic003G387800--Sobic009G140600 Sobic010G005500 Sobic010G005500 Sobic003G387800--Sobic010G005500 Sobic009G030900 Sobic009G030900 Sobic003G387800--Sobic009G030900 Sobic007G052400 Sobic007G052400 Sobic003G387800--Sobic007G052400 Sobic009G143100 Sobic009G143100 Sobic003G387800--Sobic009G143100 Sobic008G134800 Sobic008G134800 Sobic003G387800--Sobic008G134800 Sobic004G175500--Sobic003G387800 Sobic004G343300 Sobic004G343300 Sobic004G175500--Sobic004G343300 Sobic004G175500--Sobic007G004800 Sobic002G198600 Sobic002G198600 Sobic004G175500--Sobic002G198600 Sobic004G249800 Sobic004G249800 Sobic004G175500--Sobic004G249800 Sobic007G071500 Sobic007G071500 Sobic004G175500--Sobic007G071500 Sobic001G029100 Sobic001G029100 Sobic004G175500--Sobic001G029100 Sobic006G103400 Sobic006G103400 Sobic004G175500--Sobic006G103400 Sobic004G175500--Sobic009G030900 Sobic007G004800--Sobic003G387800 Sobic001G519800 Sobic001G519800 Sobic007G004800--Sobic001G519800 Sobic008G021300 Sobic008G021300 Sobic007G004800--Sobic008G021300 Sobic007G004800--Sobic004G175500 Sobic007G004800--Sobic003G002300 Sobic002G051100 Sobic002G051100 Sobic007G004800--Sobic002G051100 Sobic004G272100 Sobic004G272100 Sobic007G004800--Sobic004G272100 Sobic007G004800--Sobic007G052400 Sobic006G093900 Sobic006G093900 Sobic007G004800--Sobic006G093900 Sobic003G002300--Sobic007G052400 Sobic007G225500 Sobic007G225500 Sobic003G002300--Sobic007G225500 Sobic003G002300--Sobic009G140600 Sobic009G043000 Sobic009G043000 Sobic003G002300--Sobic009G043000 Sobic008G102000 Sobic008G102000 Sobic003G002300--Sobic008G102000 Sobic003G002300--Sobic002G051100 Sobic010G201700 Sobic010G201700 Sobic003G002300--Sobic010G201700 Sobic003G002300--Sobic001G519800 Sobic003G002300--Sobic010G005500 Sobic009G140600--Sobic003G002300 Sobic009G140600--Sobic008G102000 Sobic003G378600 Sobic003G378600 Sobic009G140600--Sobic003G378600 Sobic009G140600--Sobic003G387800 Sobic001G122300 Sobic001G122300 Sobic009G140600--Sobic001G122300 Sobic005G194100 Sobic005G194100 Sobic009G140600--Sobic005G194100 Sobic009G140600--Sobic007G052400 Sobic001G005200 Sobic001G005200 Sobic009G140600--Sobic001G005200 Sobic009G140600--Sobic009G043000 Sobic010G005500--Sobic007G052400 Sobic010G005500--Sobic003G002300 Sobic010G005500--Sobic009G030900 Sobic009G183700 Sobic009G183700 Sobic010G005500--Sobic009G183700 Sobic002G277100 Sobic002G277100 Sobic010G005500--Sobic002G277100 Sobic010G005500--Sobic003G387800 Sobic004G012900 Sobic004G012900 Sobic010G005500--Sobic004G012900 Sobic010G277600 Sobic010G277600 Sobic010G005500--Sobic010G277600 Sobic009G059300 Sobic009G059300 Sobic010G005500--Sobic009G059300 Sobic009G030900--Sobic010G005500 Sobic009G030900--Sobic010G277600 Sobic009G030900--Sobic007G052400 Sobic009G030900--Sobic009G183700 Sobic009G030900--Sobic003G387800 Sobic009G030900--Sobic009G059300 Sobic009G030900--Sobic003G002300 Sobic008G171300 Sobic008G171300 Sobic009G030900--Sobic008G171300 Sobic009G030900--Sobic004G175500 Sobic007G052400--Sobic010G005500 Sobic007G052400--Sobic003G002300 Sobic007G052400--Sobic004G012900 Sobic007G052400--Sobic008G171300 Sobic007G052400--Sobic007G225500 Sobic007G052400--Sobic009G183700 Sobic007G052400--Sobic009G030900 Sobic007G052400--Sobic008G102000 Sobic002G233700 Sobic002G233700 Sobic007G052400--Sobic002G233700 Sobic009G143100--Sobic007G071500 Sobic002G316700 Sobic002G316700 Sobic009G143100--Sobic002G316700 Sobic007G223500 Sobic007G223500 Sobic009G143100--Sobic007G223500 Sobic009G143100--Sobic008G134800 Sobic009G143100--Sobic003G387800 Sobic009G143100--Sobic009G140600 Sobic001G417200 Sobic001G417200 Sobic009G143100--Sobic001G417200 Sobic006G105900 Sobic006G105900 Sobic009G143100--Sobic006G105900 Sobic009G143100--Sobic004G249800 Sobic003G359100 Sobic003G359100 Sobic008G134800--Sobic003G359100 Sobic007G207800 Sobic007G207800 Sobic008G134800--Sobic007G207800 Sobic008G134800--Sobic007G071500 Sobic008G134800--Sobic007G223500 Sobic001G425400 Sobic001G425400 Sobic008G134800--Sobic001G425400 Sobic004G035500 Sobic004G035500 Sobic008G134800--Sobic004G035500 Sobic008G066100 Sobic008G066100 Sobic008G134800--Sobic008G066100 Sobic008G134800--Sobic009G143100 Sobic008G134800--Sobic004G249800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.