Gene annotation
Transcriptome id Sobic.008G134800.1
Synonym ATSKL1, SKL1, Sb08g018630
Functional annotation shikimate kinase, putative, expressed
UniProt C5YPX9
Pfam PF01202
Panther DB PTHR21087 PTHR21087:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G26900 : shikimate kinase like 1
RAP-DB (Rice) LOC_Os01g01302.1 : shikimate kinase, putative, expressed
MaizeGDB (Corn) Zm00025a004218
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G359100 sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed K01100: sedoheptulose-bisphosphatase
2 Sobic.007G207800 thylakoid lumen protein, chloroplast precursor, putative, expressed -
3 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
4 Sobic.007G223500 expressed protein -
5 Sobic.001G425400 high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
6 Sobic.004G035500 -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
7 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
8 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
9 Sobic.004G249800 expressed protein -
10 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
11 Sobic.009G140600 hydrolase, alpha/beta fold family domain containing protein, expressed -
12 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
13 Sobic.002G316700 ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma
14 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
15 Sobic.001G489000 NAD(P)-linked oxidoreductase superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@putativ eribonuclease P, putative, expressed -
16 Sobic.002G030500 Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed -
17 Sobic.002G051100 Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
18 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
19 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
20 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase


Gene co-expression network
sample Sobic008G134800 Sobic008G134800 Sobic003G359100 Sobic003G359100 Sobic008G134800--Sobic003G359100 Sobic007G207800 Sobic007G207800 Sobic008G134800--Sobic007G207800 Sobic007G071500 Sobic007G071500 Sobic008G134800--Sobic007G071500 Sobic007G223500 Sobic007G223500 Sobic008G134800--Sobic007G223500 Sobic001G425400 Sobic001G425400 Sobic008G134800--Sobic001G425400 Sobic004G035500 Sobic004G035500 Sobic008G134800--Sobic004G035500 Sobic008G066100 Sobic008G066100 Sobic008G134800--Sobic008G066100 Sobic009G143100 Sobic009G143100 Sobic008G134800--Sobic009G143100 Sobic004G249800 Sobic004G249800 Sobic008G134800--Sobic004G249800 Sobic003G359100--Sobic004G035500 Sobic003G359100--Sobic008G134800 Sobic003G359100--Sobic008G066100 Sobic003G359100--Sobic001G425400 Sobic003G359100--Sobic007G207800 Sobic003G359100--Sobic004G249800 Sobic003G359100--Sobic007G071500 Sobic004G272100 Sobic004G272100 Sobic003G359100--Sobic004G272100 Sobic006G105900 Sobic006G105900 Sobic003G359100--Sobic006G105900 Sobic007G207800--Sobic008G134800 Sobic007G207800--Sobic007G223500 Sobic002G030500 Sobic002G030500 Sobic007G207800--Sobic002G030500 Sobic007G207800--Sobic008G066100 Sobic007G207800--Sobic001G425400 Sobic007G207800--Sobic003G359100 Sobic001G519800 Sobic001G519800 Sobic007G207800--Sobic001G519800 Sobic002G316700 Sobic002G316700 Sobic007G207800--Sobic002G316700 Sobic007G207800--Sobic007G071500 Sobic007G071500--Sobic009G143100 Sobic007G071500--Sobic006G105900 Sobic007G071500--Sobic004G249800 Sobic004G343300 Sobic004G343300 Sobic007G071500--Sobic004G343300 Sobic007G071500--Sobic002G316700 Sobic007G071500--Sobic008G134800 Sobic007G071500--Sobic004G035500 Sobic003G052500 Sobic003G052500 Sobic007G071500--Sobic003G052500 Sobic001G177000 Sobic001G177000 Sobic007G071500--Sobic001G177000 Sobic007G223500--Sobic002G316700 Sobic007G223500--Sobic007G207800 Sobic004G227200 Sobic004G227200 Sobic007G223500--Sobic004G227200 Sobic007G223500--Sobic008G134800 Sobic007G223500--Sobic009G143100 Sobic007G223500--Sobic001G425400 Sobic007G223500--Sobic007G071500 Sobic003G387800 Sobic003G387800 Sobic007G223500--Sobic003G387800 Sobic007G223500--Sobic008G066100 Sobic001G425400--Sobic008G066100 Sobic001G425400--Sobic003G359100 Sobic001G425400--Sobic008G134800 Sobic001G425400--Sobic007G207800 Sobic004G308700 Sobic004G308700 Sobic001G425400--Sobic004G308700 Sobic001G425400--Sobic007G223500 Sobic001G425400--Sobic004G272100 Sobic001G425400--Sobic004G035500 Sobic001G098800 Sobic001G098800 Sobic001G425400--Sobic001G098800 Sobic004G035500--Sobic003G359100 Sobic004G035500--Sobic008G134800 Sobic004G035500--Sobic007G071500 Sobic004G035500--Sobic004G249800 Sobic004G035500--Sobic008G066100 Sobic008G021300 Sobic008G021300 Sobic004G035500--Sobic008G021300 Sobic004G035500--Sobic007G207800 Sobic004G035500--Sobic004G272100 Sobic004G035500--Sobic006G105900 Sobic008G066100--Sobic001G425400 Sobic008G066100--Sobic003G359100 Sobic008G066100--Sobic004G308700 Sobic008G066100--Sobic007G207800 Sobic008G066100--Sobic008G134800 Sobic008G066100--Sobic004G272100 Sobic008G066100--Sobic004G035500 Sobic008G066100--Sobic007G223500 Sobic008G066100--Sobic002G030500 Sobic009G143100--Sobic007G071500 Sobic009G143100--Sobic002G316700 Sobic009G143100--Sobic007G223500 Sobic009G143100--Sobic008G134800 Sobic009G143100--Sobic003G387800 Sobic009G140600 Sobic009G140600 Sobic009G143100--Sobic009G140600 Sobic001G417200 Sobic001G417200 Sobic009G143100--Sobic001G417200 Sobic009G143100--Sobic006G105900 Sobic009G143100--Sobic004G249800 Sobic004G249800--Sobic004G343300 Sobic004G249800--Sobic006G105900 Sobic004G249800--Sobic007G071500 Sobic006G234100 Sobic006G234100 Sobic004G249800--Sobic006G234100 Sobic004G249800--Sobic004G035500 Sobic004G249800--Sobic003G359100 Sobic004G249800--Sobic008G134800 Sobic003G132100 Sobic003G132100 Sobic004G249800--Sobic003G132100 Sobic005G042000 Sobic005G042000 Sobic004G249800--Sobic005G042000
Octagon: transcription factors


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