Gene annotation
Transcriptome id Sobic.004G272100.2,Sobic.004G272100.1
Synonym Sb04g030950, PRK
Functional annotation phosphoribulokinase/Uridine kinase family protein, expressed
UniProt A0A194YRX7 , A0A194YRT4
Pfam PF00485
Panther DB PTHR10285 PTHR10285:SF74
NCBI CDD -
KEGG Orthology K00855; PRK, phosphoribulokinase
Gene Ontology GO:0016301; kinase activity GO:0008152metabolic process GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT1G32060 : phosphoribulokinase
RAP-DB (Rice) LOC_Os02g47020.1 : phosphoribulokinase/Uridine kinase family protein, expressed
MaizeGDB (Corn) Zm00025a032414 , Zm00025a021650
Brachypodium PNT69269 , KQK00878
Barley HORVU6Hr1G067660.7 , HORVU6Hr1G067660.6 , HORVU6Hr1G067660.5 , HORVU6Hr1G067660.4 , HORVU6Hr1G067660.3 , HORVU6Hr1G067660.2 , HORVU6Hr1G067660.1 , HORVU6Hr1G067660.8
Wheat TraesCS6B02G294700 , TraesCS6D02G247400 , TraesCS6A02G267300
Populus -


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cDNA sequences
Sobic.004G272100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
2 Sobic.010G201700 GA16396-PA, putative, expressed -
3 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
4 Sobic.002G051100 Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
5 Sobic.003G002300 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed K15283: solute carrier family 35, member E1
6 Sobic.008G102000 Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed -
7 Sobic.009G043000 thioredoxin, putative, expressed -
8 Sobic.001G102800 expressed protein -
9 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
10 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
11 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
12 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
13 Sobic.003G359100 sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed K01100: sedoheptulose-bisphosphatase
14 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
15 Sobic.004G283100 -(PubMedID : 26465154)@expressed protein -
16 Sobic.004G035500 -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
17 Sobic.008G053200 fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
18 Sobic.007G225500 expressed protein -
19 Sobic.001G425400 high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
20 Sobic.006G238200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -


Gene co-expression network
sample Sobic004G272100 Sobic004G272100 Sobic004G308700 Sobic004G308700 Sobic004G272100--Sobic004G308700 Sobic010G201700 Sobic010G201700 Sobic004G272100--Sobic010G201700 Sobic001G519800 Sobic001G519800 Sobic004G272100--Sobic001G519800 Sobic002G051100 Sobic002G051100 Sobic004G272100--Sobic002G051100 Sobic003G002300 Sobic003G002300 Sobic004G272100--Sobic003G002300 Sobic008G102000 Sobic008G102000 Sobic004G272100--Sobic008G102000 Sobic009G043000 Sobic009G043000 Sobic004G272100--Sobic009G043000 Sobic001G102800 Sobic001G102800 Sobic004G272100--Sobic001G102800 Sobic008G066100 Sobic008G066100 Sobic004G272100--Sobic008G066100 Sobic004G308700--Sobic004G272100 Sobic004G308700--Sobic008G066100 Sobic004G308700--Sobic001G519800 Sobic004G308700--Sobic010G201700 Sobic001G425400 Sobic001G425400 Sobic004G308700--Sobic001G425400 Sobic003G431700 Sobic003G431700 Sobic004G308700--Sobic003G431700 Sobic004G308700--Sobic001G102800 Sobic007G004800 Sobic007G004800 Sobic004G308700--Sobic007G004800 Sobic004G308700--Sobic002G051100 Sobic010G201700--Sobic009G043000 Sobic010G201700--Sobic004G272100 Sobic010G201700--Sobic003G002300 Sobic010G201700--Sobic001G102800 Sobic010G201700--Sobic001G519800 Sobic007G225500 Sobic007G225500 Sobic010G201700--Sobic007G225500 Sobic010G201700--Sobic008G102000 Sobic006G207800 Sobic006G207800 Sobic010G201700--Sobic006G207800 Sobic010G201700--Sobic004G308700 Sobic001G519800--Sobic004G272100 Sobic001G519800--Sobic001G102800 Sobic001G519800--Sobic003G002300 Sobic001G519800--Sobic002G051100 Sobic001G519800--Sobic003G431700 Sobic001G519800--Sobic010G201700 Sobic001G519800--Sobic004G308700 Sobic001G519800--Sobic007G004800 Sobic008G053200 Sobic008G053200 Sobic001G519800--Sobic008G053200 Sobic002G051100--Sobic003G002300 Sobic002G051100--Sobic001G519800 Sobic002G051100--Sobic004G272100 Sobic002G051100--Sobic008G102000 Sobic001G489000 Sobic001G489000 Sobic002G051100--Sobic001G489000 Sobic009G140600 Sobic009G140600 Sobic002G051100--Sobic009G140600 Sobic002G051100--Sobic010G201700 Sobic003G387800 Sobic003G387800 Sobic002G051100--Sobic003G387800 Sobic002G051100--Sobic007G004800 Sobic007G052400 Sobic007G052400 Sobic003G002300--Sobic007G052400 Sobic003G002300--Sobic007G225500 Sobic003G002300--Sobic009G140600 Sobic003G002300--Sobic009G043000 Sobic003G002300--Sobic008G102000 Sobic003G002300--Sobic002G051100 Sobic003G002300--Sobic010G201700 Sobic003G002300--Sobic001G519800 Sobic010G005500 Sobic010G005500 Sobic003G002300--Sobic010G005500 Sobic008G102000--Sobic003G002300 Sobic008G102000--Sobic009G140600 Sobic008G102000--Sobic009G043000 Sobic008G102000--Sobic007G225500 Sobic008G102000--Sobic002G051100 Sobic008G102000--Sobic004G272100 Sobic007G173800 Sobic007G173800 Sobic008G102000--Sobic007G173800 Sobic008G102000--Sobic007G052400 Sobic003G378600 Sobic003G378600 Sobic008G102000--Sobic003G378600 Sobic009G043000--Sobic010G201700 Sobic009G043000--Sobic003G002300 Sobic009G043000--Sobic008G102000 Sobic009G043000--Sobic001G102800 Sobic009G043000--Sobic007G225500 Sobic009G043000--Sobic004G272100 Sobic009G043000--Sobic006G207800 Sobic009G043000--Sobic009G140600 Sobic009G043000--Sobic001G519800 Sobic001G102800--Sobic006G207800 Sobic001G102800--Sobic001G519800 Sobic001G102800--Sobic003G002300 Sobic001G102800--Sobic010G201700 Sobic001G102800--Sobic009G043000 Sobic001G102800--Sobic004G272100 Sobic007G009200 Sobic007G009200 Sobic001G102800--Sobic007G009200 Sobic001G102800--Sobic007G052400 Sobic001G102800--Sobic003G431700 Sobic008G066100--Sobic001G425400 Sobic003G359100 Sobic003G359100 Sobic008G066100--Sobic003G359100 Sobic008G066100--Sobic004G308700 Sobic007G207800 Sobic007G207800 Sobic008G066100--Sobic007G207800 Sobic008G134800 Sobic008G134800 Sobic008G066100--Sobic008G134800 Sobic008G066100--Sobic004G272100 Sobic004G035500 Sobic004G035500 Sobic008G066100--Sobic004G035500 Sobic007G223500 Sobic007G223500 Sobic008G066100--Sobic007G223500 Sobic002G030500 Sobic002G030500 Sobic008G066100--Sobic002G030500
Octagon: transcription factors


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