Gene annotation
Transcriptome id Sobic.003G359100.1
Synonym SBPASE, Sb03g040100
Functional annotation sedoheptulose-bisphosphatase (PubMedID : 26465154)
fructose-1,6-bisphosphatase, putative, expressed
UniProt C5XPV6
Pfam PF00316
Panther DB PTHR11556 PTHR11556:SF2
NCBI CDD KOG1458; Fructose-1,6-bisphosphatase
KEGG Orthology K01100; sedoheptulose-bisphosphatase
Gene Ontology GO:0005975; carbohydrate metabolic process


Orthologs (automatic annotation)
TAIR AT3G55800 : sedoheptulose-bisphosphatase
RAP-DB (Rice) LOC_Os04g16680.1 : fructose-1,6-bisphosphatase, putative, expressed
MaizeGDB (Corn) Zm00025a026827
Brachypodium KQK10614
Barley HORVU3Hr1G085270.5 , HORVU3Hr1G085270.4 , HORVU3Hr1G085270.6 , HORVU3Hr1G085270.1 , HORVU3Hr1G085270.3 , HORVU3Hr1G085270.2 , HORVU3Hr1G085270.9 , HORVU3Hr1G085270.8 , HORVU3Hr1G085270.7 , HORVU3Hr1G085270.11 , HORVU3Hr1G085270.10
Wheat TraesCS3A02G367000 , TraesCS3D02G359900 , TraesCS3D02G359900 , TraesCS3B02G398300
Populus -


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cDNA sequences
Sobic.003G359100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G035500 -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
2 Sobic.008G134800 shikimate kinase, putative, expressed -
3 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
4 Sobic.001G425400 high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
5 Sobic.007G207800 thylakoid lumen protein, chloroplast precursor, putative, expressed -
6 Sobic.004G249800 expressed protein -
7 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
8 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
9 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
10 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
11 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
12 Sobic.007G223500 expressed protein -
13 Sobic.002G030500 Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed -
14 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
15 Sobic.002G051100 Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
16 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
17 Sobic.009G140600 hydrolase, alpha/beta fold family domain containing protein, expressed -
18 Sobic.001G489000 NAD(P)-linked oxidoreductase superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@putativ eribonuclease P, putative, expressed -
19 Sobic.009G191300 photosystem II reaction center W protein, chloroplast precursor, putative, expressed K02721: photosystem II PsbW protein
20 Sobic.008G102000 Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed -


Gene co-expression network
sample Sobic003G359100 Sobic003G359100 Sobic004G035500 Sobic004G035500 Sobic003G359100--Sobic004G035500 Sobic008G134800 Sobic008G134800 Sobic003G359100--Sobic008G134800 Sobic008G066100 Sobic008G066100 Sobic003G359100--Sobic008G066100 Sobic001G425400 Sobic001G425400 Sobic003G359100--Sobic001G425400 Sobic007G207800 Sobic007G207800 Sobic003G359100--Sobic007G207800 Sobic004G249800 Sobic004G249800 Sobic003G359100--Sobic004G249800 Sobic007G071500 Sobic007G071500 Sobic003G359100--Sobic007G071500 Sobic004G272100 Sobic004G272100 Sobic003G359100--Sobic004G272100 Sobic006G105900 Sobic006G105900 Sobic003G359100--Sobic006G105900 Sobic004G035500--Sobic003G359100 Sobic004G035500--Sobic008G134800 Sobic004G035500--Sobic007G071500 Sobic004G035500--Sobic004G249800 Sobic004G035500--Sobic008G066100 Sobic008G021300 Sobic008G021300 Sobic004G035500--Sobic008G021300 Sobic004G035500--Sobic007G207800 Sobic004G035500--Sobic004G272100 Sobic004G035500--Sobic006G105900 Sobic008G134800--Sobic003G359100 Sobic008G134800--Sobic007G207800 Sobic008G134800--Sobic007G071500 Sobic007G223500 Sobic007G223500 Sobic008G134800--Sobic007G223500 Sobic008G134800--Sobic001G425400 Sobic008G134800--Sobic004G035500 Sobic008G134800--Sobic008G066100 Sobic009G143100 Sobic009G143100 Sobic008G134800--Sobic009G143100 Sobic008G134800--Sobic004G249800 Sobic008G066100--Sobic001G425400 Sobic008G066100--Sobic003G359100 Sobic004G308700 Sobic004G308700 Sobic008G066100--Sobic004G308700 Sobic008G066100--Sobic007G207800 Sobic008G066100--Sobic008G134800 Sobic008G066100--Sobic004G272100 Sobic008G066100--Sobic004G035500 Sobic008G066100--Sobic007G223500 Sobic002G030500 Sobic002G030500 Sobic008G066100--Sobic002G030500 Sobic001G425400--Sobic008G066100 Sobic001G425400--Sobic003G359100 Sobic001G425400--Sobic008G134800 Sobic001G425400--Sobic007G207800 Sobic001G425400--Sobic004G308700 Sobic001G425400--Sobic007G223500 Sobic001G425400--Sobic004G272100 Sobic001G425400--Sobic004G035500 Sobic001G098800 Sobic001G098800 Sobic001G425400--Sobic001G098800 Sobic007G207800--Sobic008G134800 Sobic007G207800--Sobic007G223500 Sobic007G207800--Sobic002G030500 Sobic007G207800--Sobic008G066100 Sobic007G207800--Sobic001G425400 Sobic007G207800--Sobic003G359100 Sobic001G519800 Sobic001G519800 Sobic007G207800--Sobic001G519800 Sobic002G316700 Sobic002G316700 Sobic007G207800--Sobic002G316700 Sobic007G207800--Sobic007G071500 Sobic004G343300 Sobic004G343300 Sobic004G249800--Sobic004G343300 Sobic004G249800--Sobic006G105900 Sobic004G249800--Sobic007G071500 Sobic006G234100 Sobic006G234100 Sobic004G249800--Sobic006G234100 Sobic004G249800--Sobic004G035500 Sobic004G249800--Sobic003G359100 Sobic004G249800--Sobic008G134800 Sobic003G132100 Sobic003G132100 Sobic004G249800--Sobic003G132100 Sobic005G042000 Sobic005G042000 Sobic004G249800--Sobic005G042000 Sobic007G071500--Sobic009G143100 Sobic007G071500--Sobic006G105900 Sobic007G071500--Sobic004G249800 Sobic007G071500--Sobic004G343300 Sobic007G071500--Sobic002G316700 Sobic007G071500--Sobic008G134800 Sobic007G071500--Sobic004G035500 Sobic003G052500 Sobic003G052500 Sobic007G071500--Sobic003G052500 Sobic001G177000 Sobic001G177000 Sobic007G071500--Sobic001G177000 Sobic004G272100--Sobic004G308700 Sobic010G201700 Sobic010G201700 Sobic004G272100--Sobic010G201700 Sobic004G272100--Sobic001G519800 Sobic002G051100 Sobic002G051100 Sobic004G272100--Sobic002G051100 Sobic003G002300 Sobic003G002300 Sobic004G272100--Sobic003G002300 Sobic008G102000 Sobic008G102000 Sobic004G272100--Sobic008G102000 Sobic009G043000 Sobic009G043000 Sobic004G272100--Sobic009G043000 Sobic001G102800 Sobic001G102800 Sobic004G272100--Sobic001G102800 Sobic004G272100--Sobic008G066100 Sobic001G078000 Sobic001G078000 Sobic006G105900--Sobic001G078000 Sobic004G235200 Sobic004G235200 Sobic006G105900--Sobic004G235200 Sobic006G105900--Sobic005G042000 Sobic006G105900--Sobic007G071500 Sobic010G241000 Sobic010G241000 Sobic006G105900--Sobic010G241000 Sobic006G105900--Sobic004G249800 Sobic006G105900--Sobic003G052500 Sobic006G105900--Sobic004G343300 Sobic006G264900 Sobic006G264900 Sobic006G105900--Sobic006G264900
Octagon: transcription factors


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