Gene annotation
| Transcriptome id | Sobic.002G030500.1,Sobic.002G030500.2 |
|---|---|
| Synonym | Sb02g002706 |
| Functional annotation | Reticulon family protein (PubMedID : 26465154) reticulon domain containing protein, putative, expressed |
| UniProt | A0A1B6Q8X0 , A0A1B6Q8Z1 |
| Pfam | PF02453 |
| Panther DB | PTHR10994 PTHR10994:SF62 |
| NCBI CDD | KOG1792; Reticulon |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G10260 : Reticulon family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g04910.1 : reticulon domain containing protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a044989 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.002G030500 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G207800 | thylakoid lumen protein, chloroplast precursor, putative, expressed | - |
| 2 | Sobic.008G066100 | 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed | - |
| 3 | Sobic.007G223500 | expressed protein | - |
| 4 | Sobic.002G316700 | ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed | K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma |
| 5 | Sobic.007G071500 | photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed | K03541: photosystem II 10kDa protein |
| 6 | Sobic.003G359100 | sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed | K01100: sedoheptulose-bisphosphatase |
| 7 | Sobic.008G134800 | shikimate kinase, putative, expressed | - |
| 8 | Sobic.006G093900 | enzyme of the cupin superfamily protein, putative, expressed | K06995: uncharacterized protein |
| 9 | Sobic.003G435800 | Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain(PubMedID : 26465154)@Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyllide a oxygenase, chloroplast precursor, putative, expressed | K13600: chlorophyllide a oxygenase |
| 10 | Sobic.001G519800 | glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 11 | Sobic.001G391900 | nifU, putative, expressed | - |
| 12 | Sobic.010G245200 | expressed protein | - |
| 13 | Sobic.009G143100 | cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed | K02636: cytochrome b6-f complex iron-sulfur subunit |
| 14 | Sobic.004G308700 | photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08911: light-harvesting complex I chlorophyll a/b binding protein 5 |
| 15 | Sobic.004G035500 | -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed | K03319: divalent anion:Na+ symporter, DASS family |
| 16 | Sobic.008G053200 | fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed | K01623: fructose-bisphosphate aldolase, class I |
| 17 | Sobic.001G425400 | high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed | K03841: FBP, fructose-1,6-bisphosphatase I |
| 18 | Sobic.006G147300 | -(PubMedID : 26465154)@expressed protein | - |
| 19 | Sobic.002G098800 | peroxiredoxin, putative, expressed | - |
| 20 | Sobic.004G227200 | ferredoxin-thioredoxin reductase, variable chain, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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