Gene annotation
Transcriptome id Sobic.008G066100.1
Synonym CRB, Sb08g005500, CSP41B
Functional annotation 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed
UniProt C5YTC0
Pfam PF01370
Panther DB PTHR10366 PTHR10366:SF289
NCBI CDD KOG1430; C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases KOG1371UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase
KEGG Orthology -
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT1G09340 : chloroplast RNA binding
RAP-DB (Rice) LOC_Os12g23180.1 : 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a040405
Brachypodium KQJ86844
Barley HORVU5Hr1G009200.21 , HORVU5Hr1G009200.20 , HORVU5Hr1G009200.23 , HORVU5Hr1G009200.22 , HORVU5Hr1G009200.25 , HORVU5Hr1G009200.24 , HORVU5Hr1G009200.27 , HORVU5Hr1G009200.26 , HORVU5Hr1G009200.29 , HORVU5Hr1G009200.28 , HORVU2Hr1G036220.1 , HORVU5Hr1G009200.36 , HORVU4Hr1G052270.6 , HORVU5Hr1G009200.34 , HORVU5Hr1G009200.35 , HORVU5Hr1G009200.32 , HORVU5Hr1G009200.33 , HORVU5Hr1G009200.30 , HORVU5Hr1G009200.31 , HORVU5Hr1G009200.38 , HORVU3Hr1G055600.1 , HORVU3Hr1G055600.2 , HORVU5Hr1G009200.6 , HORVU5Hr1G009200.4 , HORVU5Hr1G009200.5 , HORVU5Hr1G009200.2 , HORVU5Hr1G009200.3 , HORVU5Hr1G009200.1 , HORVU5Hr1G009200.8 , HORVU5Hr1G009200.9 , HORVU2Hr1G029230.1 , HORVU2Hr1G057280.1 , HORVU4Hr1G052270.4 , HORVU4Hr1G052270.5 , HORVU4Hr1G052270.2 , HORVU4Hr1G052270.3 , HORVU4Hr1G052270.1 , HORVU5Hr1G009200.18 , HORVU5Hr1G009200.19 , HORVU5Hr1G009200.14 , HORVU5Hr1G009200.15 , HORVU5Hr1G009200.16 , HORVU5Hr1G009200.17 , HORVU5Hr1G009200.11 , HORVU5Hr1G009200.12 , HORVU5Hr1G009200.13 , HORVU5Hr1G009200.37
Wheat TraesCS5B02G036800 , TraesCS5D02G044400 , TraesCS5A02G036200
Populus -


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cDNA sequences
Sobic.008G066100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G425400 high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
2 Sobic.003G359100 sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed K01100: sedoheptulose-bisphosphatase
3 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
4 Sobic.007G207800 thylakoid lumen protein, chloroplast precursor, putative, expressed -
5 Sobic.008G134800 shikimate kinase, putative, expressed -
6 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
7 Sobic.004G035500 -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
8 Sobic.007G223500 expressed protein -
9 Sobic.002G030500 Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed -
10 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
11 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
12 Sobic.001G098800 ATP synthase F1, delta subunit family protein, putative, expressed -
13 Sobic.008G053200 fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
14 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
15 Sobic.002G098800 peroxiredoxin, putative, expressed -
16 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
17 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
18 Sobic.002G316700 ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma
19 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
20 Sobic.002G051100 Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A


Gene co-expression network
sample Sobic008G066100 Sobic008G066100 Sobic001G425400 Sobic001G425400 Sobic008G066100--Sobic001G425400 Sobic003G359100 Sobic003G359100 Sobic008G066100--Sobic003G359100 Sobic004G308700 Sobic004G308700 Sobic008G066100--Sobic004G308700 Sobic007G207800 Sobic007G207800 Sobic008G066100--Sobic007G207800 Sobic008G134800 Sobic008G134800 Sobic008G066100--Sobic008G134800 Sobic004G272100 Sobic004G272100 Sobic008G066100--Sobic004G272100 Sobic004G035500 Sobic004G035500 Sobic008G066100--Sobic004G035500 Sobic007G223500 Sobic007G223500 Sobic008G066100--Sobic007G223500 Sobic002G030500 Sobic002G030500 Sobic008G066100--Sobic002G030500 Sobic001G425400--Sobic008G066100 Sobic001G425400--Sobic003G359100 Sobic001G425400--Sobic008G134800 Sobic001G425400--Sobic007G207800 Sobic001G425400--Sobic004G308700 Sobic001G425400--Sobic007G223500 Sobic001G425400--Sobic004G272100 Sobic001G425400--Sobic004G035500 Sobic001G098800 Sobic001G098800 Sobic001G425400--Sobic001G098800 Sobic003G359100--Sobic004G035500 Sobic003G359100--Sobic008G134800 Sobic003G359100--Sobic008G066100 Sobic003G359100--Sobic001G425400 Sobic003G359100--Sobic007G207800 Sobic004G249800 Sobic004G249800 Sobic003G359100--Sobic004G249800 Sobic007G071500 Sobic007G071500 Sobic003G359100--Sobic007G071500 Sobic003G359100--Sobic004G272100 Sobic006G105900 Sobic006G105900 Sobic003G359100--Sobic006G105900 Sobic004G308700--Sobic004G272100 Sobic004G308700--Sobic008G066100 Sobic001G519800 Sobic001G519800 Sobic004G308700--Sobic001G519800 Sobic010G201700 Sobic010G201700 Sobic004G308700--Sobic010G201700 Sobic004G308700--Sobic001G425400 Sobic003G431700 Sobic003G431700 Sobic004G308700--Sobic003G431700 Sobic001G102800 Sobic001G102800 Sobic004G308700--Sobic001G102800 Sobic007G004800 Sobic007G004800 Sobic004G308700--Sobic007G004800 Sobic002G051100 Sobic002G051100 Sobic004G308700--Sobic002G051100 Sobic007G207800--Sobic008G134800 Sobic007G207800--Sobic007G223500 Sobic007G207800--Sobic002G030500 Sobic007G207800--Sobic008G066100 Sobic007G207800--Sobic001G425400 Sobic007G207800--Sobic003G359100 Sobic007G207800--Sobic001G519800 Sobic002G316700 Sobic002G316700 Sobic007G207800--Sobic002G316700 Sobic007G207800--Sobic007G071500 Sobic008G134800--Sobic003G359100 Sobic008G134800--Sobic007G207800 Sobic008G134800--Sobic007G071500 Sobic008G134800--Sobic007G223500 Sobic008G134800--Sobic001G425400 Sobic008G134800--Sobic004G035500 Sobic008G134800--Sobic008G066100 Sobic009G143100 Sobic009G143100 Sobic008G134800--Sobic009G143100 Sobic008G134800--Sobic004G249800 Sobic004G272100--Sobic004G308700 Sobic004G272100--Sobic010G201700 Sobic004G272100--Sobic001G519800 Sobic004G272100--Sobic002G051100 Sobic003G002300 Sobic003G002300 Sobic004G272100--Sobic003G002300 Sobic008G102000 Sobic008G102000 Sobic004G272100--Sobic008G102000 Sobic009G043000 Sobic009G043000 Sobic004G272100--Sobic009G043000 Sobic004G272100--Sobic001G102800 Sobic004G272100--Sobic008G066100 Sobic004G035500--Sobic003G359100 Sobic004G035500--Sobic008G134800 Sobic004G035500--Sobic007G071500 Sobic004G035500--Sobic004G249800 Sobic004G035500--Sobic008G066100 Sobic008G021300 Sobic008G021300 Sobic004G035500--Sobic008G021300 Sobic004G035500--Sobic007G207800 Sobic004G035500--Sobic004G272100 Sobic004G035500--Sobic006G105900 Sobic007G223500--Sobic002G316700 Sobic007G223500--Sobic007G207800 Sobic004G227200 Sobic004G227200 Sobic007G223500--Sobic004G227200 Sobic007G223500--Sobic008G134800 Sobic007G223500--Sobic009G143100 Sobic007G223500--Sobic001G425400 Sobic007G223500--Sobic007G071500 Sobic003G387800 Sobic003G387800 Sobic007G223500--Sobic003G387800 Sobic007G223500--Sobic008G066100 Sobic002G030500--Sobic007G207800 Sobic002G030500--Sobic008G066100 Sobic002G030500--Sobic007G223500 Sobic002G030500--Sobic002G316700 Sobic002G030500--Sobic007G071500 Sobic002G030500--Sobic003G359100 Sobic002G030500--Sobic008G134800 Sobic006G093900 Sobic006G093900 Sobic002G030500--Sobic006G093900 Sobic003G435800 Sobic003G435800 Sobic002G030500--Sobic003G435800
Octagon: transcription factors


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