Gene annotation
Transcriptome id Sobic.002G051100.1,Sobic.002G051100.2
Synonym Sb02g004280
Functional annotation Probable ribose-5-phosphate isomerase (PubMedID : 26186930)
ribose-5-phosphate isomerase A, putative, expressed
UniProt A0A1B6Q9C3 , A0A1B6Q9A0
Pfam PF06026
Panther DB PTHR11934 PTHR11934:SF0
NCBI CDD KOG3075; Ribose 5-phosphate isomerase
KEGG Orthology K01807; ribose 5-phosphate isomerase A
Gene Ontology GO:0009052; pentose-phosphate shunt, non-oxidative branch GO:0004751ribose-5-phosphate isomerase activity


Orthologs (automatic annotation)
TAIR AT3G04790 : Ribose 5-phosphate isomerase, type A protein
RAP-DB (Rice) LOC_Os07g08030.1 : ribose-5-phosphate isomerase A, putative, expressed
MaizeGDB (Corn) Zm00025a045152
Brachypodium KQK20638
Barley -
Wheat TraesCS2D02G238600 , TraesCS2D02G238600 , TraesCS2D02G238600 , TraesCS2D02G238600 , TraesCS6D02G061600 , TraesCS6D02G061600 , TraesCS6A02G063200 , TraesCS2A02G234900 , TraesCS6A02G063200 , TraesCS6B02G084400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G002300 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed K15283: solute carrier family 35, member E1
2 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
3 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
4 Sobic.008G102000 Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed -
5 Sobic.001G489000 NAD(P)-linked oxidoreductase superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@putativ eribonuclease P, putative, expressed -
6 Sobic.009G140600 hydrolase, alpha/beta fold family domain containing protein, expressed -
7 Sobic.010G201700 GA16396-PA, putative, expressed -
8 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
9 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
10 Sobic.007G225500 expressed protein -
11 Sobic.010G160700 PEPC(PubMedID : 19549309)@"C4 PTPC , photosynthetic C4 gene"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase 2(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
12 Sobic.009G043000 thioredoxin, putative, expressed -
13 Sobic.001G102800 expressed protein -
14 Sobic.007G052400 rubredoxin family protein, putative, expressed -
15 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
16 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
17 Sobic.009G183700 XP_002441313.1 plastidic phosphoglycerate kinase(PubMedID : 26904072)@phosphoglycerate kinase(PubMedID : 29017446)@phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
18 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
19 Sobic.003G359100 sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed K01100: sedoheptulose-bisphosphatase
20 Sobic.008G171300 methyltransferase domain containing protein, putative, expressed K12502: VTE3, MPBQ/MSBQ methyltransferase


Gene co-expression network
sample Sobic002G051100 Sobic002G051100 Sobic003G002300 Sobic003G002300 Sobic002G051100--Sobic003G002300 Sobic001G519800 Sobic001G519800 Sobic002G051100--Sobic001G519800 Sobic004G272100 Sobic004G272100 Sobic002G051100--Sobic004G272100 Sobic008G102000 Sobic008G102000 Sobic002G051100--Sobic008G102000 Sobic001G489000 Sobic001G489000 Sobic002G051100--Sobic001G489000 Sobic009G140600 Sobic009G140600 Sobic002G051100--Sobic009G140600 Sobic010G201700 Sobic010G201700 Sobic002G051100--Sobic010G201700 Sobic003G387800 Sobic003G387800 Sobic002G051100--Sobic003G387800 Sobic007G004800 Sobic007G004800 Sobic002G051100--Sobic007G004800 Sobic007G052400 Sobic007G052400 Sobic003G002300--Sobic007G052400 Sobic007G225500 Sobic007G225500 Sobic003G002300--Sobic007G225500 Sobic003G002300--Sobic009G140600 Sobic009G043000 Sobic009G043000 Sobic003G002300--Sobic009G043000 Sobic003G002300--Sobic008G102000 Sobic003G002300--Sobic002G051100 Sobic003G002300--Sobic010G201700 Sobic003G002300--Sobic001G519800 Sobic010G005500 Sobic010G005500 Sobic003G002300--Sobic010G005500 Sobic001G519800--Sobic004G272100 Sobic001G102800 Sobic001G102800 Sobic001G519800--Sobic001G102800 Sobic001G519800--Sobic003G002300 Sobic001G519800--Sobic002G051100 Sobic003G431700 Sobic003G431700 Sobic001G519800--Sobic003G431700 Sobic001G519800--Sobic010G201700 Sobic004G308700 Sobic004G308700 Sobic001G519800--Sobic004G308700 Sobic001G519800--Sobic007G004800 Sobic008G053200 Sobic008G053200 Sobic001G519800--Sobic008G053200 Sobic004G272100--Sobic004G308700 Sobic004G272100--Sobic010G201700 Sobic004G272100--Sobic001G519800 Sobic004G272100--Sobic002G051100 Sobic004G272100--Sobic003G002300 Sobic004G272100--Sobic008G102000 Sobic004G272100--Sobic009G043000 Sobic004G272100--Sobic001G102800 Sobic008G066100 Sobic008G066100 Sobic004G272100--Sobic008G066100 Sobic008G102000--Sobic003G002300 Sobic008G102000--Sobic009G140600 Sobic008G102000--Sobic009G043000 Sobic008G102000--Sobic007G225500 Sobic008G102000--Sobic002G051100 Sobic008G102000--Sobic004G272100 Sobic007G173800 Sobic007G173800 Sobic008G102000--Sobic007G173800 Sobic008G102000--Sobic007G052400 Sobic003G378600 Sobic003G378600 Sobic008G102000--Sobic003G378600 Sobic001G489000--Sobic002G051100 Sobic001G489000--Sobic009G140600 Sobic005G194100 Sobic005G194100 Sobic001G489000--Sobic005G194100 Sobic001G489000--Sobic003G387800 Sobic009G183700 Sobic009G183700 Sobic001G489000--Sobic009G183700 Sobic001G489000--Sobic008G102000 Sobic001G489000--Sobic003G002300 Sobic008G134800 Sobic008G134800 Sobic001G489000--Sobic008G134800 Sobic001G489000--Sobic007G004800 Sobic009G140600--Sobic003G002300 Sobic009G140600--Sobic008G102000 Sobic009G140600--Sobic003G378600 Sobic009G140600--Sobic003G387800 Sobic001G122300 Sobic001G122300 Sobic009G140600--Sobic001G122300 Sobic009G140600--Sobic005G194100 Sobic009G140600--Sobic007G052400 Sobic001G005200 Sobic001G005200 Sobic009G140600--Sobic001G005200 Sobic009G140600--Sobic009G043000 Sobic010G201700--Sobic009G043000 Sobic010G201700--Sobic004G272100 Sobic010G201700--Sobic003G002300 Sobic010G201700--Sobic001G102800 Sobic010G201700--Sobic001G519800 Sobic010G201700--Sobic007G225500 Sobic010G201700--Sobic008G102000 Sobic006G207800 Sobic006G207800 Sobic010G201700--Sobic006G207800 Sobic010G201700--Sobic004G308700 Sobic004G175500 Sobic004G175500 Sobic003G387800--Sobic004G175500 Sobic003G387800--Sobic007G004800 Sobic003G387800--Sobic003G002300 Sobic003G387800--Sobic009G140600 Sobic003G387800--Sobic010G005500 Sobic009G030900 Sobic009G030900 Sobic003G387800--Sobic009G030900 Sobic003G387800--Sobic007G052400 Sobic009G143100 Sobic009G143100 Sobic003G387800--Sobic009G143100 Sobic003G387800--Sobic008G134800 Sobic007G004800--Sobic003G387800 Sobic007G004800--Sobic001G519800 Sobic008G021300 Sobic008G021300 Sobic007G004800--Sobic008G021300 Sobic007G004800--Sobic004G175500 Sobic007G004800--Sobic003G002300 Sobic007G004800--Sobic002G051100 Sobic007G004800--Sobic004G272100 Sobic007G004800--Sobic007G052400 Sobic006G093900 Sobic006G093900 Sobic007G004800--Sobic006G093900
Octagon: transcription factors


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