Gene annotation
Transcriptome id Sobic.001G489000.1
Synonym Sb01g045750,
Functional annotation NAD(P)-linked oxidoreductase superfamily protein (PubMedID : 26465154)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
putativ eribonuclease P, putative, expressed
UniProt C5WVY3
Pfam PF03703
Panther DB PTHR35688 PTHR35688:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G14345 : NAD(P)-linked oxidoreductase superfamily protein
RAP-DB (Rice) LOC_Os03g07440.1 : putativ eribonuclease P, putative, expressed
MaizeGDB (Corn) Zm00025a053334
Brachypodium KQK23406
Barley HORVU4Hr1G075160.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G051100 Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
2 Sobic.009G140600 hydrolase, alpha/beta fold family domain containing protein, expressed -
3 Sobic.005G194100 expressed protein -
4 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
5 Sobic.009G183700 XP_002441313.1 plastidic phosphoglycerate kinase(PubMedID : 26904072)@phosphoglycerate kinase(PubMedID : 29017446)@phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
6 Sobic.008G102000 Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed -
7 Sobic.003G002300 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed K15283: solute carrier family 35, member E1
8 Sobic.008G134800 shikimate kinase, putative, expressed -
9 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
10 Sobic.003G359100 sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed K01100: sedoheptulose-bisphosphatase
11 Sobic.010G160700 PEPC(PubMedID : 19549309)@"C4 PTPC , photosynthetic C4 gene"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase 2(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
12 Sobic.004G035500 -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
13 Sobic.003G378600 "oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor"(PubMedID : 26465154)@NADH dehydrogenase I subunit N, putative, expressed -
14 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
15 Sobic.004G249800 expressed protein -
16 Sobic.010G277600 - -
17 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
18 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
19 Sobic.007G173800 uncharacterized protein ycf39, putative, expressed -
20 Sobic.004G239100 -(PubMedID : 26465154)@expressed protein -


Gene co-expression network
sample Sobic001G489000 Sobic001G489000 Sobic002G051100 Sobic002G051100 Sobic001G489000--Sobic002G051100 Sobic009G140600 Sobic009G140600 Sobic001G489000--Sobic009G140600 Sobic005G194100 Sobic005G194100 Sobic001G489000--Sobic005G194100 Sobic003G387800 Sobic003G387800 Sobic001G489000--Sobic003G387800 Sobic009G183700 Sobic009G183700 Sobic001G489000--Sobic009G183700 Sobic008G102000 Sobic008G102000 Sobic001G489000--Sobic008G102000 Sobic003G002300 Sobic003G002300 Sobic001G489000--Sobic003G002300 Sobic008G134800 Sobic008G134800 Sobic001G489000--Sobic008G134800 Sobic007G004800 Sobic007G004800 Sobic001G489000--Sobic007G004800 Sobic002G051100--Sobic003G002300 Sobic001G519800 Sobic001G519800 Sobic002G051100--Sobic001G519800 Sobic004G272100 Sobic004G272100 Sobic002G051100--Sobic004G272100 Sobic002G051100--Sobic008G102000 Sobic002G051100--Sobic001G489000 Sobic002G051100--Sobic009G140600 Sobic010G201700 Sobic010G201700 Sobic002G051100--Sobic010G201700 Sobic002G051100--Sobic003G387800 Sobic002G051100--Sobic007G004800 Sobic009G140600--Sobic003G002300 Sobic009G140600--Sobic008G102000 Sobic003G378600 Sobic003G378600 Sobic009G140600--Sobic003G378600 Sobic009G140600--Sobic003G387800 Sobic001G122300 Sobic001G122300 Sobic009G140600--Sobic001G122300 Sobic009G140600--Sobic005G194100 Sobic007G052400 Sobic007G052400 Sobic009G140600--Sobic007G052400 Sobic001G005200 Sobic001G005200 Sobic009G140600--Sobic001G005200 Sobic009G043000 Sobic009G043000 Sobic009G140600--Sobic009G043000 Sobic005G194100--Sobic009G140600 Sobic005G194100--Sobic008G102000 Sobic005G194100--Sobic009G183700 Sobic010G160700 Sobic010G160700 Sobic005G194100--Sobic010G160700 Sobic004G239100 Sobic004G239100 Sobic005G194100--Sobic004G239100 Sobic008G171300 Sobic008G171300 Sobic005G194100--Sobic008G171300 Sobic005G194100--Sobic001G489000 Sobic005G194100--Sobic003G387800 Sobic009G030900 Sobic009G030900 Sobic005G194100--Sobic009G030900 Sobic004G175500 Sobic004G175500 Sobic003G387800--Sobic004G175500 Sobic003G387800--Sobic007G004800 Sobic003G387800--Sobic003G002300 Sobic003G387800--Sobic009G140600 Sobic010G005500 Sobic010G005500 Sobic003G387800--Sobic010G005500 Sobic003G387800--Sobic009G030900 Sobic003G387800--Sobic007G052400 Sobic009G143100 Sobic009G143100 Sobic003G387800--Sobic009G143100 Sobic003G387800--Sobic008G134800 Sobic010G277600 Sobic010G277600 Sobic009G183700--Sobic010G277600 Sobic002G277100 Sobic002G277100 Sobic009G183700--Sobic002G277100 Sobic009G183700--Sobic010G005500 Sobic009G183700--Sobic003G002300 Sobic009G183700--Sobic007G052400 Sobic007G004600 Sobic007G004600 Sobic009G183700--Sobic007G004600 Sobic009G183700--Sobic009G030900 Sobic009G183700--Sobic003G387800 Sobic009G183700--Sobic009G140600 Sobic008G102000--Sobic003G002300 Sobic008G102000--Sobic009G140600 Sobic008G102000--Sobic009G043000 Sobic007G225500 Sobic007G225500 Sobic008G102000--Sobic007G225500 Sobic008G102000--Sobic002G051100 Sobic008G102000--Sobic004G272100 Sobic007G173800 Sobic007G173800 Sobic008G102000--Sobic007G173800 Sobic008G102000--Sobic007G052400 Sobic008G102000--Sobic003G378600 Sobic003G002300--Sobic007G052400 Sobic003G002300--Sobic007G225500 Sobic003G002300--Sobic009G140600 Sobic003G002300--Sobic009G043000 Sobic003G002300--Sobic008G102000 Sobic003G002300--Sobic002G051100 Sobic003G002300--Sobic010G201700 Sobic003G002300--Sobic001G519800 Sobic003G002300--Sobic010G005500 Sobic003G359100 Sobic003G359100 Sobic008G134800--Sobic003G359100 Sobic007G207800 Sobic007G207800 Sobic008G134800--Sobic007G207800 Sobic007G071500 Sobic007G071500 Sobic008G134800--Sobic007G071500 Sobic007G223500 Sobic007G223500 Sobic008G134800--Sobic007G223500 Sobic001G425400 Sobic001G425400 Sobic008G134800--Sobic001G425400 Sobic004G035500 Sobic004G035500 Sobic008G134800--Sobic004G035500 Sobic008G066100 Sobic008G066100 Sobic008G134800--Sobic008G066100 Sobic008G134800--Sobic009G143100 Sobic004G249800 Sobic004G249800 Sobic008G134800--Sobic004G249800 Sobic007G004800--Sobic003G387800 Sobic007G004800--Sobic001G519800 Sobic008G021300 Sobic008G021300 Sobic007G004800--Sobic008G021300 Sobic007G004800--Sobic004G175500 Sobic007G004800--Sobic003G002300 Sobic007G004800--Sobic002G051100 Sobic007G004800--Sobic004G272100 Sobic007G004800--Sobic007G052400 Sobic006G093900 Sobic006G093900 Sobic007G004800--Sobic006G093900
Octagon: transcription factors


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