Gene annotation
| Transcriptome id | Sobic.005G194100.1 |
|---|---|
| Synonym | SEP1, Sb05g025080 |
| Functional annotation | expressed protein |
| UniProt | C5Y6V0 |
| Pfam | - |
| Panther DB | PTHR14154:SF18 PTHR14154 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G34190 : stress enhanced protein 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os11g40600.1 : expressed protein |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.005G194100 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G140600 | hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 2 | Sobic.008G102000 | Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed | - |
| 3 | Sobic.009G183700 | XP_002441313.1 plastidic phosphoglycerate kinase(PubMedID : 26904072)@phosphoglycerate kinase(PubMedID : 29017446)@phosphoglycerate kinase protein, putative, expressed | K00927: PGK, phosphoglycerate kinase |
| 4 | Sobic.010G160700 | PEPC(PubMedID : 19549309)@"C4 PTPC , photosynthetic C4 gene"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase 2(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphoenolpyruvate carboxylase, putative, expressed | K01595: phosphoenolpyruvate carboxylase |
| 5 | Sobic.004G239100 | -(PubMedID : 26465154)@expressed protein | - |
| 6 | Sobic.008G171300 | methyltransferase domain containing protein, putative, expressed | K12502: VTE3, MPBQ/MSBQ methyltransferase |
| 7 | Sobic.001G489000 | NAD(P)-linked oxidoreductase superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@putativ eribonuclease P, putative, expressed | - |
| 8 | Sobic.003G387800 | unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed | - |
| 9 | Sobic.009G030900 | bundle sheath defective protein 2, putative, expressed | - |
| 10 | Sobic.003G002300 | Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed | K15283: solute carrier family 35, member E1 |
| 11 | Sobic.001G405700 | - | - |
| 12 | Sobic.010G277600 | - | - |
| 13 | Sobic.009G043000 | thioredoxin, putative, expressed | - |
| 14 | Sobic.010G005500 | ferredoxin--NADP reductase, chloroplast precursor, putative, expressed | K02641: ferredoxin--NADP+ reductase |
| 15 | Sobic.009G143100 | cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed | K02636: cytochrome b6-f complex iron-sulfur subunit |
| 16 | Sobic.008G172700 | OsDegp15 - Putative Deg protease homologue, expressed | - |
| 17 | Sobic.007G052400 | rubredoxin family protein, putative, expressed | - |
| 18 | Sobic.003G378600 | "oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor"(PubMedID : 26465154)@NADH dehydrogenase I subunit N, putative, expressed | - |
| 19 | Sobic.002G227700 | gibberellin receptor GID1L2, putative, expressed | - |
| 20 | Sobic.002G051100 | Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed | K01807: ribose 5-phosphate isomerase A |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
