Gene annotation
Transcriptome id Sobic.010G277600.1
Synonym Sb10g031120, HCF136
Functional annotation -
UniProt C5Z2L8
Pfam PF14870
Panther DB PTHR32010 PTHR32010:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G23120 : photosystem II stability/assembly factor, chloroplast (HCF136)
RAP-DB (Rice) -
MaizeGDB (Corn) Zm00025a041679
Brachypodium KQK16607
Barley HORVU7Hr1G120190.8 , HORVU7Hr1G120190.9 , HORVU7Hr1G120190.2 , HORVU7Hr1G120190.1 , HORVU7Hr1G120190.6 , HORVU7Hr1G120190.7 , HORVU7Hr1G120190.10
Wheat TraesCS7D02G549100 , TraesCS7B02G486500 , TraesCS7A02G560200
Populus -


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cDNA sequences
Sobic.010G277600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G183700 XP_002441313.1 plastidic phosphoglycerate kinase(PubMedID : 26904072)@phosphoglycerate kinase(PubMedID : 29017446)@phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
2 Sobic.009G030900 bundle sheath defective protein 2, putative, expressed -
3 Sobic.010G005500 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
4 Sobic.007G052400 rubredoxin family protein, putative, expressed -
5 Sobic.004G239100 -(PubMedID : 26465154)@expressed protein -
6 Sobic.004G012900 expressed protein -
7 Sobic.002G277100 -(PubMedID : 29017446)@triosephosphate isomerase, chloroplast precursor, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
8 Sobic.007G004600 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
9 Sobic.007G173800 uncharacterized protein ycf39, putative, expressed -
10 Sobic.008G172700 OsDegp15 - Putative Deg protease homologue, expressed -
11 Sobic.001G415400 PsbP, putative, expressed -
12 Sobic.008G102000 Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed -
13 Sobic.008G171300 methyltransferase domain containing protein, putative, expressed K12502: VTE3, MPBQ/MSBQ methyltransferase
14 Sobic.002G267900 expressed protein -
15 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
16 Sobic.003G002300 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed K15283: solute carrier family 35, member E1
17 Sobic.005G194100 expressed protein -
18 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
19 Sobic.009G059300 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
20 Sobic.001G527000 PsbP-like protein 1 (At)(PubMedID : 27208977)@Photosystem I subunit P-like protein(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2


Gene co-expression network
sample Sobic010G277600 Sobic010G277600 Sobic009G183700 Sobic009G183700 Sobic010G277600--Sobic009G183700 Sobic009G030900 Sobic009G030900 Sobic010G277600--Sobic009G030900 Sobic010G005500 Sobic010G005500 Sobic010G277600--Sobic010G005500 Sobic007G052400 Sobic007G052400 Sobic010G277600--Sobic007G052400 Sobic004G239100 Sobic004G239100 Sobic010G277600--Sobic004G239100 Sobic004G012900 Sobic004G012900 Sobic010G277600--Sobic004G012900 Sobic002G277100 Sobic002G277100 Sobic010G277600--Sobic002G277100 Sobic007G004600 Sobic007G004600 Sobic010G277600--Sobic007G004600 Sobic007G173800 Sobic007G173800 Sobic010G277600--Sobic007G173800 Sobic009G183700--Sobic010G277600 Sobic009G183700--Sobic002G277100 Sobic009G183700--Sobic010G005500 Sobic003G002300 Sobic003G002300 Sobic009G183700--Sobic003G002300 Sobic009G183700--Sobic007G052400 Sobic009G183700--Sobic007G004600 Sobic009G183700--Sobic009G030900 Sobic003G387800 Sobic003G387800 Sobic009G183700--Sobic003G387800 Sobic009G140600 Sobic009G140600 Sobic009G183700--Sobic009G140600 Sobic009G030900--Sobic010G005500 Sobic009G030900--Sobic010G277600 Sobic009G030900--Sobic007G052400 Sobic009G030900--Sobic009G183700 Sobic009G030900--Sobic003G387800 Sobic009G059300 Sobic009G059300 Sobic009G030900--Sobic009G059300 Sobic009G030900--Sobic003G002300 Sobic008G171300 Sobic008G171300 Sobic009G030900--Sobic008G171300 Sobic004G175500 Sobic004G175500 Sobic009G030900--Sobic004G175500 Sobic010G005500--Sobic007G052400 Sobic010G005500--Sobic003G002300 Sobic010G005500--Sobic009G030900 Sobic010G005500--Sobic009G183700 Sobic010G005500--Sobic002G277100 Sobic010G005500--Sobic003G387800 Sobic010G005500--Sobic004G012900 Sobic010G005500--Sobic010G277600 Sobic010G005500--Sobic009G059300 Sobic007G052400--Sobic010G005500 Sobic007G052400--Sobic003G002300 Sobic007G052400--Sobic004G012900 Sobic007G052400--Sobic008G171300 Sobic007G225500 Sobic007G225500 Sobic007G052400--Sobic007G225500 Sobic007G052400--Sobic009G183700 Sobic007G052400--Sobic009G030900 Sobic008G102000 Sobic008G102000 Sobic007G052400--Sobic008G102000 Sobic002G233700 Sobic002G233700 Sobic007G052400--Sobic002G233700 Sobic004G239100--Sobic010G277600 Sobic004G239100--Sobic009G183700 Sobic008G172700 Sobic008G172700 Sobic004G239100--Sobic008G172700 Sobic005G194100 Sobic005G194100 Sobic004G239100--Sobic005G194100 Sobic003G378600 Sobic003G378600 Sobic004G239100--Sobic003G378600 Sobic004G239100--Sobic008G102000 Sobic004G239100--Sobic009G030900 Sobic004G239100--Sobic009G140600 Sobic002G198600 Sobic002G198600 Sobic004G239100--Sobic002G198600 Sobic004G012900--Sobic007G052400 Sobic004G012900--Sobic002G233700 Sobic002G401800 Sobic002G401800 Sobic004G012900--Sobic002G401800 Sobic004G012900--Sobic010G005500 Sobic004G012900--Sobic003G378600 Sobic004G012900--Sobic009G059300 Sobic004G012900--Sobic010G277600 Sobic003G387100 Sobic003G387100 Sobic004G012900--Sobic003G387100 Sobic004G012900--Sobic008G171300 Sobic002G277100--Sobic009G183700 Sobic002G277100--Sobic010G005500 Sobic002G277100--Sobic010G277600 Sobic002G277100--Sobic003G002300 Sobic002G277100--Sobic007G052400 Sobic002G277100--Sobic007G225500 Sobic002G277100--Sobic009G030900 Sobic002G277100--Sobic007G173800 Sobic009G043000 Sobic009G043000 Sobic002G277100--Sobic009G043000 Sobic007G004600--Sobic009G183700 Sobic007G004600--Sobic010G277600 Sobic001G527000 Sobic001G527000 Sobic007G004600--Sobic001G527000 Sobic009G091850 Sobic009G091850 Sobic007G004600--Sobic009G091850 Sobic007G004600--Sobic009G030900 Sobic004G311100 Sobic004G311100 Sobic007G004600--Sobic004G311100 Sobic004G251500 Sobic004G251500 Sobic007G004600--Sobic004G251500 Sobic003G433900 Sobic003G433900 Sobic007G004600--Sobic003G433900 Sobic007G004600--Sobic003G387800 Sobic007G173800--Sobic008G102000 Sobic004G359600 Sobic004G359600 Sobic007G173800--Sobic004G359600 Sobic007G173800--Sobic007G225500 Sobic007G173800--Sobic009G043000 Sobic007G173800--Sobic010G277600 Sobic007G173800--Sobic003G002300 Sobic007G173800--Sobic009G183700 Sobic007G173800--Sobic002G277100 Sobic006G238200 Sobic006G238200 Sobic007G173800--Sobic006G238200
Octagon: transcription factors


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