Gene annotation
| Transcriptome id | Sobic.001G527000.2,Sobic.001G527000.1 |
|---|---|
| Synonym | PPL1, Sb01g049040, PPL1 |
| Functional annotation | PsbP-like protein 1 (At) (PubMedID : 27208977) Photosystem I subunit P-like protein (PubMedID : 29017446) PsbP, putative, expressed |
| UniProt | C5X0W1 , A0A1Z5SC76 |
| Pfam | PF01789 |
| Panther DB | PTHR31407 PTHR31407:SF4 |
| NCBI CDD | - |
| KEGG Orthology | K02717; photosystem II oxygen-evolving enhancer protein 2 |
| Gene Ontology | GO:0015979; photosynthesis GO:0009654photosystem II oxygen evolving complex GO:0009523photosystem II GO:0005509calcium ion binding |
Orthologs (automatic annotation)
| TAIR | AT3G55330 : PsbP-like protein 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os10g32400.2 : PsbP, putative, expressed |
| MaizeGDB (Corn) | Zm00025a000303 |
| Brachypodium | KQK23922 |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.001G527000 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G091850 | - | - |
| 2 | Sobic.007G004600 | Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | K02639: ferredoxin |
| 3 | Sobic.002G152700 | rhodanese-like, putative, expressed | - |
| 4 | Sobic.001G415400 | PsbP, putative, expressed | - |
| 5 | Sobic.005G123200 | cbbY, putative, expressed | - |
| 6 | Sobic.010G277600 | - | - |
| 7 | Sobic.009G183700 | XP_002441313.1 plastidic phosphoglycerate kinase(PubMedID : 26904072)@phosphoglycerate kinase(PubMedID : 29017446)@phosphoglycerate kinase protein, putative, expressed | K00927: PGK, phosphoglycerate kinase |
| 8 | Sobic.009G030900 | bundle sheath defective protein 2, putative, expressed | - |
| 9 | Sobic.007G143700 | immunophilin(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | - |
| 10 | Sobic.003G132100 | magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed | K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase |
| 11 | Sobic.007G116950 | - | - |
| 12 | Sobic.008G051000 | magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed | K03405: chlI, magnesium chelatase subunit I |
| 13 | Sobic.008G021300 | Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed | - |
| 14 | Sobic.003G433900 | expressed protein | - |
| 15 | Sobic.002G277100 | -(PubMedID : 29017446)@triosephosphate isomerase, chloroplast precursor, putative, expressed | K01803: TPI, triosephosphate isomerase (TIM) |
| 16 | Sobic.004G343300 | -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein | - |
| 17 | Sobic.004G311100 | -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed | K01507: inorganic pyrophosphatase |
| 18 | Sobic.010G005500 | ferredoxin--NADP reductase, chloroplast precursor, putative, expressed | K02641: ferredoxin--NADP+ reductase |
| 19 | Sobic.001G448400 | UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed | - |
| 20 | Sobic.004G249800 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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