Gene annotation
| Transcriptome id | Sobic.004G311100.1 |
|---|---|
| Synonym | AtPPa6, AtPPa6;PPa6, Sb04g034340, PPa6 |
| Functional annotation | - (PubMedID : 29017446) - (PubMedID : 26976818) soluble inorganic pyrophosphatase, putative, expressed |
| UniProt | C5XSW9 |
| Pfam | PF00719 |
| Panther DB | PTHR10286 PTHR10286:SF3 |
| NCBI CDD | KOG1626; Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 |
| KEGG Orthology | K01507; inorganic pyrophosphatase |
| Gene Ontology | GO:0006796; phosphate-containing compound metabolic process GO:0005737cytoplasm GO:0004427inorganic diphosphatase activity GO:0000287magnesium ion binding |
Orthologs (automatic annotation)
| TAIR | AT5G09650 : pyrophosphorylase 6 |
|---|---|
| RAP-DB (Rice) | LOC_Os02g52940.2 : soluble inorganic pyrophosphatase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a022242 |
| Brachypodium | KQK01726 |
| Barley | HORVU6Hr1G080160.3 , HORVU1Hr1G031270.31 , HORVU1Hr1G031270.36 , HORVU1Hr1G031270.19 , HORVU6Hr1G080160.2 , HORVU6Hr1G080160.1 |
| Wheat | TraesCS6B02G360300 , TraesCS6A02G329500 , TraesCS6D02G308400 |
| Populus | PNT20266 |
JBrowse
| Sobic.004G311100 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G112300 | -(PubMedID : 29017446)@-(PubMedID : 26976818)@citrate transporter, putative, expressed | - |
| 2 | Sobic.007G143700 | immunophilin(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | - |
| 3 | Sobic.003G386300 | expressed protein | - |
| 4 | Sobic.004G335800 | ribosomal L9, putative, expressed | K02939: RP-L9, MRPL9, large subunit ribosomal protein L9 |
| 5 | Sobic.001G122400 | ribosomal protein S13p/S18e, putative, expressed | K02952: RP-S13, small subunit ribosomal protein S13 |
| 6 | Sobic.001G527100 | L11 domain containing ribosomal protein, putative, expressed | K02867: RP-L11, MRPL11, large subunit ribosomal protein L11 |
| 7 | Sobic.004G116100 | 50S ribosomal protein L21, chloroplast precursor, putative, expressed | K02888: RP-L21, MRPL21, large subunit ribosomal protein L21 |
| 8 | Sobic.003G328200 | thylakoid lumenal 20 kDa protein, putative, expressed | - |
| 9 | Sobic.002G271700 | rhodanese-like domain containing protein, putative, expressed | - |
| 10 | Sobic.007G004600 | Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | K02639: ferredoxin |
| 11 | Sobic.002G341500 | rotamase(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed | - |
| 12 | Sobic.002G198600 | -(PubMedID : 29017446)@expressed protein | - |
| 13 | Sobic.009G091800 | -(PubMedID : 29017446)@PTAC16, putative, expressed | - |
| 14 | Sobic.002G198000 | CRR6, putative, expressed | - |
| 15 | Sobic.008G051000 | magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed | K03405: chlI, magnesium chelatase subunit I |
| 16 | Sobic.004G298100 | 50S ribosomal protein L19, chloroplast precursor, putative, expressed | K02884: RP-L19, MRPL19, large subunit ribosomal protein L19 |
| 17 | Sobic.001G240000 | ribosomal protein L28 protein, putative, expressed | K02902: RP-L28, MRPL28, large subunit ribosomal protein L28 |
| 18 | Sobic.003G433900 | expressed protein | - |
| 19 | Sobic.004G054500 | porphobilinogen deaminase, chloroplast precursor, putative, expressed | K01749: hemC, hydroxymethylbilane synthase |
| 20 | Sobic.001G040000 | 50S ribosomal protein L17, putative, expressed | K02879: RP-L17, MRPL17, large subunit ribosomal protein L17 |
Gene co-expression network
Octagon: transcription factors
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