Gene annotation
| Transcriptome id | Sobic.003G433900.1 |
|---|---|
| Synonym | Sb03g046510, NDH-O |
| Functional annotation | expressed protein |
| UniProt | C5XIL2 |
| Pfam | PF11910 |
| Panther DB | PTHR36728 PTHR36728:SF2 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016655; oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor GO:0005886plasma membrane |
Orthologs (automatic annotation)
| TAIR | AT1G74880 : NAD(P)H:plastoquinone dehydrogenase complex subunit O |
|---|---|
| RAP-DB (Rice) | LOC_Os01g72950.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a039079 |
| Brachypodium | KQK11649 |
| Barley | HORVU3Hr1G110660.7 , HORVU3Hr1G110660.6 , HORVU3Hr1G110660.5 , HORVU3Hr1G110660.4 , HORVU3Hr1G110660.3 , HORVU3Hr1G110660.2 , HORVU3Hr1G110660.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.003G433900 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G198600 | -(PubMedID : 29017446)@expressed protein | - |
| 2 | Sobic.003G132100 | magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed | K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase |
| 3 | Sobic.009G091850 | - | - |
| 4 | Sobic.009G130700 | lumen 18.3kDa protein(PubMedID : 29017446)@thylakoid lumen protein, putative, expressed | - |
| 5 | Sobic.008G051000 | magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed | K03405: chlI, magnesium chelatase subunit I |
| 6 | Sobic.009G091800 | -(PubMedID : 29017446)@PTAC16, putative, expressed | - |
| 7 | Sobic.004G238500 | Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed | K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase |
| 8 | Sobic.002G297300 | expressed protein | - |
| 9 | Sobic.002G033800 | expressed protein | - |
| 10 | Sobic.004G343300 | -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein | - |
| 11 | Sobic.004G311100 | -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed | K01507: inorganic pyrophosphatase |
| 12 | Sobic.004G175500 | OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed | K00434: L-ascorbate peroxidase |
| 13 | Sobic.007G004600 | Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | K02639: ferredoxin |
| 14 | Sobic.010G022100 | magnesium-protoporphyrin O-methyltransferase, putative, expressed | K03428: bchM, magnesium-protoporphyrin O-methyltransferase |
| 15 | Sobic.001G382100 | Photosystem II repair protein PSB27-H1(PubMedID : 26186930)@Photosystem II 11 kD protein (Os)(PubMedID : 27208977)@photosystem II 11 kD protein, putative, expressed | K08902: photosystem II Psb27 protein |
| 16 | Sobic.001G221300 | alcohol oxidase, putative, expressed | K17756: long-chain-alcohol oxidase |
| 17 | Sobic.004G054500 | porphobilinogen deaminase, chloroplast precursor, putative, expressed | K01749: hemC, hydroxymethylbilane synthase |
| 18 | Sobic.009G030900 | bundle sheath defective protein 2, putative, expressed | - |
| 19 | Sobic.010G255600 | thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed | - |
| 20 | Sobic.004G249800 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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