Gene annotation
Transcriptome id Sobic.004G054500.1
Synonym Sb04g004630, HEMC
Functional annotation porphobilinogen deaminase, chloroplast precursor, putative, expressed
UniProt A0A1Z5RLI1
Pfam PF03900 PF01379
Panther DB PTHR11557
NCBI CDD KOG2892; Porphobilinogen deaminase
KEGG Orthology K01749; hemC, hydroxymethylbilane synthase
Gene Ontology GO:0004418; hydroxymethylbilane synthase activity


Orthologs (automatic annotation)
TAIR AT5G08280 : hydroxymethylbilane synthase
RAP-DB (Rice) LOC_Os02g07230.1 : porphobilinogen deaminase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a034803 , Zm00025a019072
Brachypodium PNT65977 , KQJ93528
Barley HORVU6Hr1G028050.1 , HORVU6Hr1G028050.3 , HORVU6Hr1G028050.2 , HORVU6Hr1G028050.4
Wheat TraesCS6D02G132500 , TraesCS6D02G132500 , TraesCS6D02G132500 , TraesCS6A02G143300 , TraesCS6A02G143300 , TraesCS6B02G171600 , TraesCS6B02G171600
Populus -


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cDNA sequences
Sobic.004G054500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G203000 thylakoid lumenal protein, putative, expressed -
2 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I
3 Sobic.007G143700 immunophilin(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
4 Sobic.004G317900 expressed protein -
5 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
6 Sobic.010G255600 thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed -
7 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
8 Sobic.003G157400 TPR repeat, putative, expressed -
9 Sobic.003G386300 expressed protein -
10 Sobic.001G475600 prenyltransferase, putative, expressed K02548: 1,4-dihydroxy-2-naphthoate polyprenyltransferase
11 Sobic.006G248200 - -
12 Sobic.004G311100 -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
13 Sobic.004G114800 expressed protein -
14 Sobic.007G116950 - -
15 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
16 Sobic.004G298100 50S ribosomal protein L19, chloroplast precursor, putative, expressed K02884: RP-L19, MRPL19, large subunit ribosomal protein L19
17 Sobic.001G531200 methylthioribose kinase, putative, expressed -
18 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
19 Sobic.003G433900 expressed protein -
20 Sobic.007G185100 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase


Gene co-expression network
sample Sobic004G054500 Sobic004G054500 Sobic001G203000 Sobic001G203000 Sobic004G054500--Sobic001G203000 Sobic008G051000 Sobic008G051000 Sobic004G054500--Sobic008G051000 Sobic007G143700 Sobic007G143700 Sobic004G054500--Sobic007G143700 Sobic004G317900 Sobic004G317900 Sobic004G054500--Sobic004G317900 Sobic001G040000 Sobic001G040000 Sobic004G054500--Sobic001G040000 Sobic010G255600 Sobic010G255600 Sobic004G054500--Sobic010G255600 Sobic004G335800 Sobic004G335800 Sobic004G054500--Sobic004G335800 Sobic003G157400 Sobic003G157400 Sobic004G054500--Sobic003G157400 Sobic003G386300 Sobic003G386300 Sobic004G054500--Sobic003G386300 Sobic001G203000--Sobic008G051000 Sobic004G114800 Sobic004G114800 Sobic001G203000--Sobic004G114800 Sobic007G116950 Sobic007G116950 Sobic001G203000--Sobic007G116950 Sobic001G203000--Sobic004G054500 Sobic001G203000--Sobic010G255600 Sobic004G234200 Sobic004G234200 Sobic001G203000--Sobic004G234200 Sobic001G382100 Sobic001G382100 Sobic001G203000--Sobic001G382100 Sobic009G091800 Sobic009G091800 Sobic001G203000--Sobic009G091800 Sobic004G238500 Sobic004G238500 Sobic001G203000--Sobic004G238500 Sobic008G051000--Sobic009G091800 Sobic008G051000--Sobic004G238500 Sobic008G051000--Sobic007G116950 Sobic008G051000--Sobic001G203000 Sobic003G132100 Sobic003G132100 Sobic008G051000--Sobic003G132100 Sobic006G264201 Sobic006G264201 Sobic008G051000--Sobic006G264201 Sobic009G091850 Sobic009G091850 Sobic008G051000--Sobic009G091850 Sobic008G051000--Sobic004G234200 Sobic002G297300 Sobic002G297300 Sobic008G051000--Sobic002G297300 Sobic007G143700--Sobic004G335800 Sobic004G311100 Sobic004G311100 Sobic007G143700--Sobic004G311100 Sobic007G143700--Sobic004G054500 Sobic001G415400 Sobic001G415400 Sobic007G143700--Sobic001G415400 Sobic007G143700--Sobic003G386300 Sobic001G122400 Sobic001G122400 Sobic007G143700--Sobic001G122400 Sobic004G116100 Sobic004G116100 Sobic007G143700--Sobic004G116100 Sobic007G143700--Sobic003G157400 Sobic008G112300 Sobic008G112300 Sobic007G143700--Sobic008G112300 Sobic003G246400 Sobic003G246400 Sobic004G317900--Sobic003G246400 Sobic007G185100 Sobic007G185100 Sobic004G317900--Sobic007G185100 Sobic003G295800 Sobic003G295800 Sobic004G317900--Sobic003G295800 Sobic010G233800 Sobic010G233800 Sobic004G317900--Sobic010G233800 Sobic001G027600 Sobic001G027600 Sobic004G317900--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic004G317900--Sobic001G453300 Sobic003G328200 Sobic003G328200 Sobic004G317900--Sobic003G328200 Sobic001G017000 Sobic001G017000 Sobic004G317900--Sobic001G017000 Sobic004G317900--Sobic004G054500 Sobic001G040000--Sobic004G335800 Sobic001G391400 Sobic001G391400 Sobic001G040000--Sobic001G391400 Sobic001G240000 Sobic001G240000 Sobic001G040000--Sobic001G240000 Sobic001G527100 Sobic001G527100 Sobic001G040000--Sobic001G527100 Sobic001G040000--Sobic003G295800 Sobic002G251400 Sobic002G251400 Sobic001G040000--Sobic002G251400 Sobic001G040000--Sobic004G116100 Sobic001G040000--Sobic001G122400 Sobic001G040000--Sobic003G386300 Sobic010G255600--Sobic001G382100 Sobic010G255600--Sobic001G203000 Sobic010G255600--Sobic009G091850 Sobic010G255600--Sobic008G051000 Sobic004G036100 Sobic004G036100 Sobic010G255600--Sobic004G036100 Sobic010G255600--Sobic007G185100 Sobic010G255600--Sobic004G054500 Sobic003G099400 Sobic003G099400 Sobic010G255600--Sobic003G099400 Sobic010G255600--Sobic007G116950 Sobic004G335800--Sobic001G040000 Sobic004G335800--Sobic001G122400 Sobic004G335800--Sobic003G386300 Sobic004G335800--Sobic001G527100 Sobic004G335800--Sobic004G116100 Sobic003G324700 Sobic003G324700 Sobic004G335800--Sobic003G324700 Sobic004G335800--Sobic007G143700 Sobic004G335800--Sobic001G391400 Sobic004G335800--Sobic001G240000 Sobic003G157400--Sobic003G386300 Sobic003G157400--Sobic004G054500 Sobic003G157400--Sobic004G036100 Sobic003G157400--Sobic007G143700 Sobic003G157400--Sobic010G255600 Sobic001G475600 Sobic001G475600 Sobic003G157400--Sobic001G475600 Sobic003G157400--Sobic001G122400 Sobic003G157400--Sobic004G335800 Sobic010G095200 Sobic010G095200 Sobic003G157400--Sobic010G095200 Sobic003G386300--Sobic001G122400 Sobic003G386300--Sobic004G335800 Sobic003G386300--Sobic001G527100 Sobic002G198000 Sobic002G198000 Sobic003G386300--Sobic002G198000 Sobic003G386300--Sobic001G240000 Sobic003G386300--Sobic010G095200 Sobic003G386300--Sobic001G040000 Sobic004G164100 Sobic004G164100 Sobic003G386300--Sobic004G164100 Sobic003G386300--Sobic001G475600
Octagon: transcription factors


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