Gene annotation
Transcriptome id Sobic.003G157400.4,Sobic.003G157400.3,Sobic.003G157400.1,Sobic.003G157400.2
Synonym Sb03g013720
Functional annotation TPR repeat, putative, expressed
UniProt A0A1W0VXI7 , A0A1W0VXH9 , C5XJU9
Pfam PF13414
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G05625 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g24090.1,LOC_Os01g24090.2 : TPR repeat, putative, expressed
MaizeGDB (Corn) Zm00025a036172
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G157400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G386300 expressed protein -
2 Sobic.004G054500 porphobilinogen deaminase, chloroplast precursor, putative, expressed K01749: hemC, hydroxymethylbilane synthase
3 Sobic.004G036100 SAM dependent carboxyl methyltransferase, putative, expressed -
4 Sobic.007G143700 immunophilin(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
5 Sobic.010G255600 thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed -
6 Sobic.001G475600 prenyltransferase, putative, expressed K02548: 1,4-dihydroxy-2-naphthoate polyprenyltransferase
7 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
8 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
9 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
10 Sobic.004G311100 -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
11 Sobic.002G341500 rotamase(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed -
12 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
13 Sobic.003G324700 expressed protein -
14 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
15 Sobic.009G238300 expressed protein -
16 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
17 Sobic.003G069200 transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
18 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
19 Sobic.007G185100 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
20 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I


Gene co-expression network
sample Sobic003G157400 Sobic003G157400 Sobic003G386300 Sobic003G386300 Sobic003G157400--Sobic003G386300 Sobic004G054500 Sobic004G054500 Sobic003G157400--Sobic004G054500 Sobic004G036100 Sobic004G036100 Sobic003G157400--Sobic004G036100 Sobic007G143700 Sobic007G143700 Sobic003G157400--Sobic007G143700 Sobic010G255600 Sobic010G255600 Sobic003G157400--Sobic010G255600 Sobic001G475600 Sobic001G475600 Sobic003G157400--Sobic001G475600 Sobic001G122400 Sobic001G122400 Sobic003G157400--Sobic001G122400 Sobic004G335800 Sobic004G335800 Sobic003G157400--Sobic004G335800 Sobic010G095200 Sobic010G095200 Sobic003G157400--Sobic010G095200 Sobic003G386300--Sobic001G122400 Sobic003G386300--Sobic004G335800 Sobic001G527100 Sobic001G527100 Sobic003G386300--Sobic001G527100 Sobic002G198000 Sobic002G198000 Sobic003G386300--Sobic002G198000 Sobic001G240000 Sobic001G240000 Sobic003G386300--Sobic001G240000 Sobic003G386300--Sobic010G095200 Sobic001G040000 Sobic001G040000 Sobic003G386300--Sobic001G040000 Sobic004G164100 Sobic004G164100 Sobic003G386300--Sobic004G164100 Sobic003G386300--Sobic001G475600 Sobic001G203000 Sobic001G203000 Sobic004G054500--Sobic001G203000 Sobic008G051000 Sobic008G051000 Sobic004G054500--Sobic008G051000 Sobic004G054500--Sobic007G143700 Sobic004G317900 Sobic004G317900 Sobic004G054500--Sobic004G317900 Sobic004G054500--Sobic001G040000 Sobic004G054500--Sobic010G255600 Sobic004G054500--Sobic004G335800 Sobic004G054500--Sobic003G157400 Sobic004G054500--Sobic003G386300 Sobic004G036100--Sobic010G255600 Sobic003G120500 Sobic003G120500 Sobic004G036100--Sobic003G120500 Sobic004G036100--Sobic003G157400 Sobic001G464700 Sobic001G464700 Sobic004G036100--Sobic001G464700 Sobic003G069200 Sobic003G069200 Sobic004G036100--Sobic003G069200 Sobic007G185100 Sobic007G185100 Sobic004G036100--Sobic007G185100 Sobic004G036100--Sobic004G054500 Sobic004G044200 Sobic004G044200 Sobic004G036100--Sobic004G044200 Sobic006G145500 Sobic006G145500 Sobic004G036100--Sobic006G145500 Sobic007G143700--Sobic004G335800 Sobic004G311100 Sobic004G311100 Sobic007G143700--Sobic004G311100 Sobic007G143700--Sobic004G054500 Sobic001G415400 Sobic001G415400 Sobic007G143700--Sobic001G415400 Sobic007G143700--Sobic003G386300 Sobic007G143700--Sobic001G122400 Sobic004G116100 Sobic004G116100 Sobic007G143700--Sobic004G116100 Sobic007G143700--Sobic003G157400 Sobic008G112300 Sobic008G112300 Sobic007G143700--Sobic008G112300 Sobic001G382100 Sobic001G382100 Sobic010G255600--Sobic001G382100 Sobic010G255600--Sobic001G203000 Sobic009G091850 Sobic009G091850 Sobic010G255600--Sobic009G091850 Sobic010G255600--Sobic008G051000 Sobic010G255600--Sobic004G036100 Sobic010G255600--Sobic007G185100 Sobic010G255600--Sobic004G054500 Sobic003G099400 Sobic003G099400 Sobic010G255600--Sobic003G099400 Sobic007G116950 Sobic007G116950 Sobic010G255600--Sobic007G116950 Sobic001G475600--Sobic003G386300 Sobic007G013400 Sobic007G013400 Sobic001G475600--Sobic007G013400 Sobic001G475600--Sobic001G040000 Sobic002G251400 Sobic002G251400 Sobic001G475600--Sobic002G251400 Sobic001G475600--Sobic004G335800 Sobic001G475600--Sobic010G095200 Sobic003G295800 Sobic003G295800 Sobic001G475600--Sobic003G295800 Sobic001G475600--Sobic001G122400 Sobic001G475600--Sobic007G143700 Sobic001G122400--Sobic003G386300 Sobic001G122400--Sobic004G335800 Sobic001G122400--Sobic001G527100 Sobic003G324700 Sobic003G324700 Sobic001G122400--Sobic003G324700 Sobic001G469933 Sobic001G469933 Sobic001G122400--Sobic001G469933 Sobic001G122400--Sobic001G240000 Sobic001G368500 Sobic001G368500 Sobic001G122400--Sobic001G368500 Sobic001G122400--Sobic002G198000 Sobic001G391400 Sobic001G391400 Sobic001G122400--Sobic001G391400 Sobic004G335800--Sobic001G040000 Sobic004G335800--Sobic001G122400 Sobic004G335800--Sobic003G386300 Sobic004G335800--Sobic001G527100 Sobic004G335800--Sobic004G116100 Sobic004G335800--Sobic003G324700 Sobic004G335800--Sobic007G143700 Sobic004G335800--Sobic001G391400 Sobic004G335800--Sobic001G240000 Sobic010G095200--Sobic003G386300 Sobic010G095200--Sobic001G122400 Sobic010G095200--Sobic001G240000 Sobic007G090537 Sobic007G090537 Sobic010G095200--Sobic007G090537 Sobic010G095200--Sobic004G164100 Sobic010G095200--Sobic001G527100 Sobic010G095200--Sobic002G251400 Sobic010G095200--Sobic002G198000 Sobic009G130800 Sobic009G130800 Sobic010G095200--Sobic009G130800
Octagon: transcription factors


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