Gene annotation
| Transcriptome id | Sobic.002G341500.1 |
|---|---|
| Synonym | Sb02g036560 |
| Functional annotation | rotamase (PubMedID : 29017446) peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed |
| UniProt | C5XBM3 |
| Pfam | PF00160 |
| Panther DB | PTHR11071 PTHR11071:SF174 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0006457; protein folding GO:0003755peptidyl-prolyl cis-trans isomerase activity GO:0000413protein peptidyl-prolyl isomerization |
Orthologs (automatic annotation)
| TAIR | AT3G15520 : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g37830.2 : peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a014933 |
| Brachypodium | KQK15706 |
| Barley | HORVU2Hr1G039880.12 , HORVU2Hr1G039880.13 , HORVU2Hr1G039880.10 , HORVU2Hr1G039880.11 , HORVU2Hr1G039880.2 , HORVU2Hr1G039880.3 , HORVU2Hr1G039880.4 , HORVU2Hr1G039880.5 , HORVU2Hr1G039880.6 , HORVU2Hr1G039880.7 , HORVU2Hr1G039880.8 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.002G341500 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G311100 | -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed | K01507: inorganic pyrophosphatase |
| 2 | Sobic.003G386300 | expressed protein | - |
| 3 | Sobic.007G143700 | immunophilin(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | - |
| 4 | Sobic.002G271700 | rhodanese-like domain containing protein, putative, expressed | - |
| 5 | Sobic.001G531200 | methylthioribose kinase, putative, expressed | - |
| 6 | Sobic.004G335800 | ribosomal L9, putative, expressed | K02939: RP-L9, MRPL9, large subunit ribosomal protein L9 |
| 7 | Sobic.001G122400 | ribosomal protein S13p/S18e, putative, expressed | K02952: RP-S13, small subunit ribosomal protein S13 |
| 8 | Sobic.008G112300 | -(PubMedID : 29017446)@-(PubMedID : 26976818)@citrate transporter, putative, expressed | - |
| 9 | Sobic.001G527100 | L11 domain containing ribosomal protein, putative, expressed | K02867: RP-L11, MRPL11, large subunit ribosomal protein L11 |
| 10 | Sobic.004G054500 | porphobilinogen deaminase, chloroplast precursor, putative, expressed | K01749: hemC, hydroxymethylbilane synthase |
| 11 | Sobic.002G198600 | -(PubMedID : 29017446)@expressed protein | - |
| 12 | Sobic.003G328200 | thylakoid lumenal 20 kDa protein, putative, expressed | - |
| 13 | Sobic.003G157400 | TPR repeat, putative, expressed | - |
| 14 | Sobic.008G051000 | magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed | K03405: chlI, magnesium chelatase subunit I |
| 15 | Sobic.006G248200 | - | - |
| 16 | Sobic.003G433900 | expressed protein | - |
| 17 | Sobic.004G116100 | 50S ribosomal protein L21, chloroplast precursor, putative, expressed | K02888: RP-L21, MRPL21, large subunit ribosomal protein L21 |
| 18 | Sobic.009G091800 | -(PubMedID : 29017446)@PTAC16, putative, expressed | - |
| 19 | Sobic.001G040000 | 50S ribosomal protein L17, putative, expressed | K02879: RP-L17, MRPL17, large subunit ribosomal protein L17 |
| 20 | Sobic.002G267900 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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