Gene annotation
Transcriptome id Sobic.002G198600.1
Synonym CRR23, Sb02g024470
Functional annotation - (PubMedID : 29017446)
expressed protein
UniProt C5XC83
Pfam PF10716
Panther DB PTHR36727 PTHR36727:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016655; oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor


Orthologs (automatic annotation)
TAIR AT1G70760 : inorganic carbon transport protein-related
RAP-DB (Rice) LOC_Os05g28090.1 : expressed protein
MaizeGDB (Corn) Zm00025a046946 , Zm00025a013895
Brachypodium KQJ90195
Barley HORVU5Hr1G066490.2 , HORVU5Hr1G066490.3 , HORVU5Hr1G066490.4 , HORVU5Hr1G066490.5 , HORVU5Hr1G066490.6 , HORVU5Hr1G066490.7
Wheat TraesCS5D02G237400 , TraesCS5A02G230400 , TraesCS5B02G228900
Populus -


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cDNA sequences
Sobic.002G198600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G433900 expressed protein -
2 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
3 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
4 Sobic.003G132100 magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
5 Sobic.003G386300 expressed protein -
6 Sobic.009G030900 bundle sheath defective protein 2, putative, expressed -
7 Sobic.006G248200 - -
8 Sobic.010G011800 OsFBO18 - F-box and other domain containing protein, expressed -
9 Sobic.004G311100 -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
10 Sobic.004G239100 -(PubMedID : 26465154)@expressed protein -
11 Sobic.010G022100 magnesium-protoporphyrin O-methyltransferase, putative, expressed K03428: bchM, magnesium-protoporphyrin O-methyltransferase
12 Sobic.002G288300 Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
13 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
14 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
15 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
16 Sobic.001G029100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.002G065200 pentatricopeptide, putative, expressed -
18 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
19 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I
20 Sobic.001G041800 -(PubMedID : 29017446)@magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed K03404: chlD, magnesium chelatase subunit D


Gene co-expression network
sample Sobic002G198600 Sobic002G198600 Sobic003G433900 Sobic003G433900 Sobic002G198600--Sobic003G433900 Sobic004G175500 Sobic004G175500 Sobic002G198600--Sobic004G175500 Sobic009G091800 Sobic009G091800 Sobic002G198600--Sobic009G091800 Sobic003G132100 Sobic003G132100 Sobic002G198600--Sobic003G132100 Sobic003G386300 Sobic003G386300 Sobic002G198600--Sobic003G386300 Sobic009G030900 Sobic009G030900 Sobic002G198600--Sobic009G030900 Sobic006G248200 Sobic006G248200 Sobic002G198600--Sobic006G248200 Sobic010G011800 Sobic010G011800 Sobic002G198600--Sobic010G011800 Sobic004G311100 Sobic004G311100 Sobic002G198600--Sobic004G311100 Sobic003G433900--Sobic002G198600 Sobic003G433900--Sobic003G132100 Sobic009G091850 Sobic009G091850 Sobic003G433900--Sobic009G091850 Sobic009G130700 Sobic009G130700 Sobic003G433900--Sobic009G130700 Sobic008G051000 Sobic008G051000 Sobic003G433900--Sobic008G051000 Sobic003G433900--Sobic009G091800 Sobic004G238500 Sobic004G238500 Sobic003G433900--Sobic004G238500 Sobic002G297300 Sobic002G297300 Sobic003G433900--Sobic002G297300 Sobic002G033800 Sobic002G033800 Sobic003G433900--Sobic002G033800 Sobic003G387800 Sobic003G387800 Sobic004G175500--Sobic003G387800 Sobic004G343300 Sobic004G343300 Sobic004G175500--Sobic004G343300 Sobic007G004800 Sobic007G004800 Sobic004G175500--Sobic007G004800 Sobic004G175500--Sobic002G198600 Sobic004G249800 Sobic004G249800 Sobic004G175500--Sobic004G249800 Sobic007G071500 Sobic007G071500 Sobic004G175500--Sobic007G071500 Sobic001G029100 Sobic001G029100 Sobic004G175500--Sobic001G029100 Sobic006G103400 Sobic006G103400 Sobic004G175500--Sobic006G103400 Sobic004G175500--Sobic009G030900 Sobic009G091800--Sobic008G051000 Sobic002G288300 Sobic002G288300 Sobic009G091800--Sobic002G288300 Sobic004G234200 Sobic004G234200 Sobic009G091800--Sobic004G234200 Sobic009G091800--Sobic002G297300 Sobic010G022100 Sobic010G022100 Sobic009G091800--Sobic010G022100 Sobic006G264201 Sobic006G264201 Sobic009G091800--Sobic006G264201 Sobic009G091800--Sobic004G238500 Sobic010G000500 Sobic010G000500 Sobic009G091800--Sobic010G000500 Sobic007G116950 Sobic007G116950 Sobic009G091800--Sobic007G116950 Sobic003G132100--Sobic004G343300 Sobic003G132100--Sobic008G051000 Sobic003G197400 Sobic003G197400 Sobic003G132100--Sobic003G197400 Sobic003G132100--Sobic006G264201 Sobic003G132100--Sobic004G238500 Sobic003G132100--Sobic003G433900 Sobic003G132100--Sobic004G249800 Sobic001G448400 Sobic001G448400 Sobic003G132100--Sobic001G448400 Sobic003G132100--Sobic009G091800 Sobic001G122400 Sobic001G122400 Sobic003G386300--Sobic001G122400 Sobic004G335800 Sobic004G335800 Sobic003G386300--Sobic004G335800 Sobic001G527100 Sobic001G527100 Sobic003G386300--Sobic001G527100 Sobic002G198000 Sobic002G198000 Sobic003G386300--Sobic002G198000 Sobic001G240000 Sobic001G240000 Sobic003G386300--Sobic001G240000 Sobic010G095200 Sobic010G095200 Sobic003G386300--Sobic010G095200 Sobic001G040000 Sobic001G040000 Sobic003G386300--Sobic001G040000 Sobic004G164100 Sobic004G164100 Sobic003G386300--Sobic004G164100 Sobic001G475600 Sobic001G475600 Sobic003G386300--Sobic001G475600 Sobic010G005500 Sobic010G005500 Sobic009G030900--Sobic010G005500 Sobic010G277600 Sobic010G277600 Sobic009G030900--Sobic010G277600 Sobic007G052400 Sobic007G052400 Sobic009G030900--Sobic007G052400 Sobic009G183700 Sobic009G183700 Sobic009G030900--Sobic009G183700 Sobic009G030900--Sobic003G387800 Sobic009G059300 Sobic009G059300 Sobic009G030900--Sobic009G059300 Sobic003G002300 Sobic003G002300 Sobic009G030900--Sobic003G002300 Sobic008G171300 Sobic008G171300 Sobic009G030900--Sobic008G171300 Sobic009G030900--Sobic004G175500 Sobic006G248200--Sobic003G386300 Sobic006G248200--Sobic001G240000 Sobic001G531200 Sobic001G531200 Sobic006G248200--Sobic001G531200 Sobic006G248200--Sobic002G198600 Sobic003G030900 Sobic003G030900 Sobic006G248200--Sobic003G030900 Sobic006G248200--Sobic001G475600 Sobic004G054500 Sobic004G054500 Sobic006G248200--Sobic004G054500 Sobic002G305700 Sobic002G305700 Sobic006G248200--Sobic002G305700 Sobic006G248200--Sobic004G311100 Sobic010G011800--Sobic010G022100 Sobic010G011800--Sobic002G288300 Sobic010G011800--Sobic009G091800 Sobic010G011800--Sobic010G000500 Sobic010G011800--Sobic002G198600 Sobic002G030200 Sobic002G030200 Sobic010G011800--Sobic002G030200 Sobic010G011800--Sobic004G238500 Sobic010G011800--Sobic004G234200 Sobic001G177000 Sobic001G177000 Sobic010G011800--Sobic001G177000 Sobic008G112300 Sobic008G112300 Sobic004G311100--Sobic008G112300 Sobic007G143700 Sobic007G143700 Sobic004G311100--Sobic007G143700 Sobic004G311100--Sobic003G386300 Sobic004G311100--Sobic004G335800 Sobic004G311100--Sobic001G122400 Sobic004G311100--Sobic001G527100 Sobic004G116100 Sobic004G116100 Sobic004G311100--Sobic004G116100 Sobic003G328200 Sobic003G328200 Sobic004G311100--Sobic003G328200 Sobic002G271700 Sobic002G271700 Sobic004G311100--Sobic002G271700
Octagon: transcription factors


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