Gene annotation
| Transcriptome id | Sobic.009G091800.1,Sobic.009G091800.2 |
|---|---|
| Synonym | PTAC16, Sb09g010000 |
| Functional annotation | - (PubMedID : 29017446) PTAC16, putative, expressed |
| UniProt | A0A1Z5R2W3 , C5YVN9 |
| Pfam | - |
| Panther DB | PTHR14194 PTHR14194:SF38 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G46780 : plastid transcriptionally active 16 |
|---|---|
| RAP-DB (Rice) | LOC_Os05g22614.1 : PTAC16, putative, expressed |
| MaizeGDB (Corn) | Zm00025a036937 |
| Brachypodium | - |
| Barley | HORVU3Hr1G065580.7 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.009G091800 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G051000 | magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed | K03405: chlI, magnesium chelatase subunit I |
| 2 | Sobic.002G288300 | Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed | K08912: light-harvesting complex II chlorophyll a/b binding protein 1 |
| 3 | Sobic.004G234200 | peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | K01802: peptidylprolyl isomerase |
| 4 | Sobic.002G297300 | expressed protein | - |
| 5 | Sobic.010G022100 | magnesium-protoporphyrin O-methyltransferase, putative, expressed | K03428: bchM, magnesium-protoporphyrin O-methyltransferase |
| 6 | Sobic.006G264201 | - | K08917: light-harvesting complex II chlorophyll a/b binding protein 6 |
| 7 | Sobic.004G238500 | Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed | K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase |
| 8 | Sobic.010G000500 | Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed | K02638: plastocyanin |
| 9 | Sobic.007G116950 | - | - |
| 10 | Sobic.002G329600 | Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed | K08901: photosystem II oxygen-evolving enhancer protein 3 |
| 11 | Sobic.003G132100 | magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed | K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase |
| 12 | Sobic.002G030200 | Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed | K02717: photosystem II oxygen-evolving enhancer protein 2 |
| 13 | Sobic.004G114800 | expressed protein | - |
| 14 | Sobic.002G198600 | -(PubMedID : 29017446)@expressed protein | - |
| 15 | Sobic.004G193400 | photosystem II 5 kDa protein, chloroplast precursor, putative, expressed | - |
| 16 | Sobic.001G203000 | thylakoid lumenal protein, putative, expressed | - |
| 17 | Sobic.009G091850 | - | - |
| 18 | Sobic.002G414400 | -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed | - |
| 19 | Sobic.006G264900 | -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed | K03403: chlH, magnesium chelatase subunit H |
| 20 | Sobic.010G011800 | OsFBO18 - F-box and other domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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