Gene annotation
Transcriptome id Sobic.006G264900.1
Synonym CHLH, CCH, CCH1, GUN5, Sb06g032740, ABAR
Functional annotation - (PubMedID : 29017446)
magnesium-chelatase, putative, expressed
UniProt C5YAG7
Pfam PF11965 PF02514
Panther DB PTHR23304 PTHR23304:SF115
NCBI CDD -
KEGG Orthology K03403; chlH, magnesium chelatase subunit H
Gene Ontology GO:0016851; magnesium chelatase activity GO:0009058biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G13630 : magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH)
RAP-DB (Rice) LOC_Os03g20700.2 : magnesium-chelatase, putative, expressed
MaizeGDB (Corn) Zm00025a057368
Brachypodium KQK14882
Barley HORVU6Hr1G009720.1 , HORVU5Hr1G048750.1 , HORVU3Hr1G083320.1 , HORVU3Hr1G040290.1 , HORVU2Hr1G023560.2 , HORVU2Hr1G023560.6 , HORVU2Hr1G023560.7 , HORVU1Hr1G012600.2 , HORVU1Hr1G012600.3 , HORVU2Hr1G023560.1 , HORVU2Hr1G023560.3 , HORVU2Hr1G023560.4 , HORVU2Hr1G023560.5
Wheat TraesCS2D02G136200 , TraesCS2A02G134000 , TraesCS2B02G157600
Populus -


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cDNA sequences
Sobic.006G264900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
2 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
3 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
4 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
5 Sobic.005G042000 Ribulose bisphosphate carboxylase small chain(PubMedID : 26186930)@rubisco small subunit 1A(PubMedID : 26317421)@RuBisCO small chain (Os)(PubMedID : 27208977)@-(PubMedID : 26976818)@CO2 fixation reaction(PubMedID : 21562335)@ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed K01602: ribulose-bisphosphate carboxylase small chain
6 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
7 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
8 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
9 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
10 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
11 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
12 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
13 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
14 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
15 Sobic.002G339200 Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08914: light-harvesting complex II chlorophyll a/b binding protein 3
16 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
17 Sobic.004G249800 expressed protein -
18 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
19 Sobic.002G288300 Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
20 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein


Gene co-expression network
sample Sobic006G264900 Sobic006G264900 Sobic009G234600 Sobic009G234600 Sobic006G264900--Sobic009G234600 Sobic010G000500 Sobic010G000500 Sobic006G264900--Sobic010G000500 Sobic006G105900 Sobic006G105900 Sobic006G264900--Sobic006G105900 Sobic010G241000 Sobic010G241000 Sobic006G264900--Sobic010G241000 Sobic005G042000 Sobic005G042000 Sobic006G264900--Sobic005G042000 Sobic002G329600 Sobic002G329600 Sobic006G264900--Sobic002G329600 Sobic001G046900 Sobic001G046900 Sobic006G264900--Sobic001G046900 Sobic001G078000 Sobic001G078000 Sobic006G264900--Sobic001G078000 Sobic001G177000 Sobic001G177000 Sobic006G264900--Sobic001G177000 Sobic009G234600--Sobic010G241000 Sobic009G234600--Sobic006G264900 Sobic009G234600--Sobic002G329600 Sobic009G234600--Sobic001G177000 Sobic002G339200 Sobic002G339200 Sobic009G234600--Sobic002G339200 Sobic006G264201 Sobic006G264201 Sobic009G234600--Sobic006G264201 Sobic009G234600--Sobic010G000500 Sobic009G234600--Sobic001G046900 Sobic009G234600--Sobic001G078000 Sobic002G338000 Sobic002G338000 Sobic010G000500--Sobic002G338000 Sobic002G030200 Sobic002G030200 Sobic010G000500--Sobic002G030200 Sobic003G055300 Sobic003G055300 Sobic010G000500--Sobic003G055300 Sobic001G206200 Sobic001G206200 Sobic010G000500--Sobic001G206200 Sobic010G000500--Sobic009G234600 Sobic010G000500--Sobic006G264900 Sobic010G000500--Sobic001G046900 Sobic002G414400 Sobic002G414400 Sobic010G000500--Sobic002G414400 Sobic010G000500--Sobic001G177000 Sobic006G105900--Sobic001G078000 Sobic004G235200 Sobic004G235200 Sobic006G105900--Sobic004G235200 Sobic006G105900--Sobic005G042000 Sobic007G071500 Sobic007G071500 Sobic006G105900--Sobic007G071500 Sobic006G105900--Sobic010G241000 Sobic004G249800 Sobic004G249800 Sobic006G105900--Sobic004G249800 Sobic003G052500 Sobic003G052500 Sobic006G105900--Sobic003G052500 Sobic004G343300 Sobic004G343300 Sobic006G105900--Sobic004G343300 Sobic006G105900--Sobic006G264900 Sobic010G241000--Sobic009G234600 Sobic010G241000--Sobic002G329600 Sobic010G241000--Sobic001G177000 Sobic010G241000--Sobic003G052500 Sobic010G241000--Sobic001G078000 Sobic004G056900 Sobic004G056900 Sobic010G241000--Sobic004G056900 Sobic010G241000--Sobic001G046900 Sobic006G073500 Sobic006G073500 Sobic010G241000--Sobic006G073500 Sobic010G241000--Sobic002G030200 Sobic005G042000--Sobic004G235200 Sobic005G042000--Sobic006G105900 Sobic005G042000--Sobic010G241000 Sobic005G087000 Sobic005G087000 Sobic005G042000--Sobic005G087000 Sobic005G042000--Sobic006G264900 Sobic005G042000--Sobic001G046900 Sobic005G042000--Sobic010G000500 Sobic005G042000--Sobic001G078000 Sobic005G042000--Sobic009G234600 Sobic002G329600--Sobic006G264201 Sobic002G329600--Sobic002G339200 Sobic002G329600--Sobic001G078000 Sobic002G329600--Sobic010G241000 Sobic002G329600--Sobic009G234600 Sobic007G029300 Sobic007G029300 Sobic002G329600--Sobic007G029300 Sobic002G297300 Sobic002G297300 Sobic002G329600--Sobic002G297300 Sobic002G329600--Sobic002G030200 Sobic001G448400 Sobic001G448400 Sobic002G329600--Sobic001G448400 Sobic002G352100 Sobic002G352100 Sobic001G046900--Sobic002G352100 Sobic001G046900--Sobic004G056900 Sobic007G136900 Sobic007G136900 Sobic001G046900--Sobic007G136900 Sobic001G046900--Sobic005G087000 Sobic001G046900--Sobic006G073500 Sobic002G033900 Sobic002G033900 Sobic001G046900--Sobic002G033900 Sobic001G046900--Sobic001G177000 Sobic001G046900--Sobic004G235200 Sobic002G242000 Sobic002G242000 Sobic001G046900--Sobic002G242000 Sobic001G078000--Sobic002G329600 Sobic001G078000--Sobic006G105900 Sobic001G078000--Sobic002G339200 Sobic001G078000--Sobic010G241000 Sobic001G078000--Sobic009G234600 Sobic001G078000--Sobic005G042000 Sobic001G078000--Sobic006G264201 Sobic001G078000--Sobic006G264900 Sobic001G078000--Sobic007G029300 Sobic001G177000--Sobic004G056900 Sobic001G177000--Sobic002G242000 Sobic001G177000--Sobic001G046900 Sobic001G177000--Sobic010G241000 Sobic001G177000--Sobic002G030200 Sobic008G063500 Sobic008G063500 Sobic001G177000--Sobic008G063500 Sobic001G177000--Sobic009G234600 Sobic001G177000--Sobic007G136900 Sobic001G177000--Sobic002G338000
Octagon: transcription factors


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