Gene annotation
Transcriptome id Sobic.009G234600.1
Synonym LHCB1.5, Sb09g028720, LHB1B2
Functional annotation Chorophyll a/b binding protein M9 (PubMedID : 26186930)
chlorophyll A-B binding protein, putative, expressed
UniProt Q0H640 , C5YVW5
Pfam PF00504
Panther DB PTHR21649 PTHR21649:SF20
NCBI CDD -
KEGG Orthology K08912; light-harvesting complex II chlorophyll a/b binding protein 1
Gene Ontology GO:0016020; membrane GO:0009765photosynthesis, light harvesting


Orthologs (automatic annotation)
TAIR AT2G34420 : photosystem II light harvesting complex gene B1B2
RAP-DB (Rice) LOC_Os09g17740.1 : chlorophyll A-B binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a048387 , Zm00025a007156 , Zm00025a051590 , Zm00025a047961 , Zm00025a014904 , Zm00025a038456 , Zm00025a036624 , Zm00025a028623 , Zm00025a007161 , Zm00025a044593 , Zm00025a028626 , Zm00025a028624
Brachypodium KQK15763 , KQJ91372 , PNT68562 , PNT68561 , PNT68560 , KQK04838
Barley HORVU7Hr1G040380.8 , HORVU7Hr1G040380.9 , HORVU7Hr1G040380.6 , HORVU7Hr1G040380.7 , HORVU7Hr1G040380.4 , HORVU7Hr1G040380.5 , HORVU7Hr1G040380.2 , HORVU7Hr1G040380.3 , HORVU6Hr1G016880.1 , HORVU7Hr1G040380.1 , HORVU5Hr1G109260.4 , HORVU5Hr1G109260.3 , HORVU5Hr1G109250.1 , HORVU1Hr1G088880.2 , HORVU1Hr1G088880.1 , HORVU5Hr1G124160.1 , HORVU5Hr1G087250.1 , HORVU1Hr1G088870.2 , HORVU6Hr1G091660.1 , HORVU7Hr1G040370.2 , HORVU7Hr1G040370.1 , HORVU5Hr1G082420.2 , HORVU5Hr1G082420.1 , HORVU5Hr1G087250.2 , HORVU6Hr1G091650.1 , HORVU2Hr1G040780.8 , HORVU2Hr1G040780.7 , HORVU2Hr1G040780.6 , HORVU2Hr1G040780.5 , HORVU2Hr1G040780.4 , HORVU2Hr1G040780.3 , HORVU2Hr1G040780.2 , HORVU2Hr1G040780.1 , HORVU7Hr1G040380.10 , HORVU7Hr1G040380.11 , HORVU1Hr1G088920.1 , HORVU1Hr1G088920.2 , HORVU1Hr1G088920.3 , HORVU6Hr1G016890.1 , HORVU6Hr1G016890.2 , HORVU6Hr1G016890.3 , HORVU6Hr1G016890.4 , HORVU6Hr1G016890.5 , HORVU6Hr1G016890.6 , HORVU1Hr1G088870.1 , HORVU7Hr1G058120.2 , HORVU7Hr1G058120.1
Wheat TraesCS5D02G329200 , TraesCS5A02G322500 , TraesCS2A02G204800 , TraesCS5B02G322900 , TraesCS1D02G428200 , TraesCS6D02G088600 , TraesCS5B02G353200 , TraesCS5A02G454400 , TraesCS6A02G094600 , TraesCS1B02G317500
Populus PNT05290


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cDNA sequences
Sobic.009G234600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
2 Sobic.006G264900 -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed K03403: chlH, magnesium chelatase subunit H
3 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
4 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
5 Sobic.002G339200 Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08914: light-harvesting complex II chlorophyll a/b binding protein 3
6 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
7 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
8 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
9 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
10 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
11 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
12 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
13 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
14 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
15 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
16 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
17 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
18 Sobic.009G229700 Photosystem I reaction center subunit VI(PubMedID : 26186930)@expressed protein K02695: photosystem I subunit VI
19 Sobic.005G042000 Ribulose bisphosphate carboxylase small chain(PubMedID : 26186930)@rubisco small subunit 1A(PubMedID : 26317421)@RuBisCO small chain (Os)(PubMedID : 27208977)@-(PubMedID : 26976818)@CO2 fixation reaction(PubMedID : 21562335)@ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed K01602: ribulose-bisphosphate carboxylase small chain
20 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -


Gene co-expression network
sample Sobic009G234600 Sobic009G234600 Sobic010G241000 Sobic010G241000 Sobic009G234600--Sobic010G241000 Sobic006G264900 Sobic006G264900 Sobic009G234600--Sobic006G264900 Sobic002G329600 Sobic002G329600 Sobic009G234600--Sobic002G329600 Sobic001G177000 Sobic001G177000 Sobic009G234600--Sobic001G177000 Sobic002G339200 Sobic002G339200 Sobic009G234600--Sobic002G339200 Sobic006G264201 Sobic006G264201 Sobic009G234600--Sobic006G264201 Sobic010G000500 Sobic010G000500 Sobic009G234600--Sobic010G000500 Sobic001G046900 Sobic001G046900 Sobic009G234600--Sobic001G046900 Sobic001G078000 Sobic001G078000 Sobic009G234600--Sobic001G078000 Sobic010G241000--Sobic009G234600 Sobic010G241000--Sobic002G329600 Sobic010G241000--Sobic001G177000 Sobic003G052500 Sobic003G052500 Sobic010G241000--Sobic003G052500 Sobic010G241000--Sobic001G078000 Sobic004G056900 Sobic004G056900 Sobic010G241000--Sobic004G056900 Sobic010G241000--Sobic001G046900 Sobic006G073500 Sobic006G073500 Sobic010G241000--Sobic006G073500 Sobic002G030200 Sobic002G030200 Sobic010G241000--Sobic002G030200 Sobic006G264900--Sobic009G234600 Sobic006G264900--Sobic010G000500 Sobic006G105900 Sobic006G105900 Sobic006G264900--Sobic006G105900 Sobic006G264900--Sobic010G241000 Sobic005G042000 Sobic005G042000 Sobic006G264900--Sobic005G042000 Sobic006G264900--Sobic002G329600 Sobic006G264900--Sobic001G046900 Sobic006G264900--Sobic001G078000 Sobic006G264900--Sobic001G177000 Sobic002G329600--Sobic006G264201 Sobic002G329600--Sobic002G339200 Sobic002G329600--Sobic001G078000 Sobic002G329600--Sobic010G241000 Sobic002G329600--Sobic009G234600 Sobic007G029300 Sobic007G029300 Sobic002G329600--Sobic007G029300 Sobic002G297300 Sobic002G297300 Sobic002G329600--Sobic002G297300 Sobic002G329600--Sobic002G030200 Sobic001G448400 Sobic001G448400 Sobic002G329600--Sobic001G448400 Sobic001G177000--Sobic004G056900 Sobic002G242000 Sobic002G242000 Sobic001G177000--Sobic002G242000 Sobic001G177000--Sobic001G046900 Sobic001G177000--Sobic010G241000 Sobic001G177000--Sobic002G030200 Sobic008G063500 Sobic008G063500 Sobic001G177000--Sobic008G063500 Sobic001G177000--Sobic009G234600 Sobic007G136900 Sobic007G136900 Sobic001G177000--Sobic007G136900 Sobic002G338000 Sobic002G338000 Sobic001G177000--Sobic002G338000 Sobic002G339200--Sobic002G329600 Sobic002G339200--Sobic006G264201 Sobic002G339200--Sobic001G078000 Sobic006G234100 Sobic006G234100 Sobic002G339200--Sobic006G234100 Sobic002G339200--Sobic009G234600 Sobic002G339200--Sobic010G241000 Sobic002G339200--Sobic001G448400 Sobic010G109500 Sobic010G109500 Sobic002G339200--Sobic010G109500 Sobic002G339200--Sobic007G029300 Sobic006G264201--Sobic002G329600 Sobic006G264201--Sobic002G339200 Sobic004G238500 Sobic004G238500 Sobic006G264201--Sobic004G238500 Sobic006G264201--Sobic009G234600 Sobic006G264201--Sobic007G029300 Sobic006G264201--Sobic010G241000 Sobic006G264201--Sobic001G078000 Sobic006G264201--Sobic001G448400 Sobic009G091800 Sobic009G091800 Sobic006G264201--Sobic009G091800 Sobic010G000500--Sobic002G338000 Sobic010G000500--Sobic002G030200 Sobic003G055300 Sobic003G055300 Sobic010G000500--Sobic003G055300 Sobic001G206200 Sobic001G206200 Sobic010G000500--Sobic001G206200 Sobic010G000500--Sobic009G234600 Sobic010G000500--Sobic006G264900 Sobic010G000500--Sobic001G046900 Sobic002G414400 Sobic002G414400 Sobic010G000500--Sobic002G414400 Sobic010G000500--Sobic001G177000 Sobic002G352100 Sobic002G352100 Sobic001G046900--Sobic002G352100 Sobic001G046900--Sobic004G056900 Sobic001G046900--Sobic007G136900 Sobic005G087000 Sobic005G087000 Sobic001G046900--Sobic005G087000 Sobic001G046900--Sobic006G073500 Sobic002G033900 Sobic002G033900 Sobic001G046900--Sobic002G033900 Sobic001G046900--Sobic001G177000 Sobic004G235200 Sobic004G235200 Sobic001G046900--Sobic004G235200 Sobic001G046900--Sobic002G242000 Sobic001G078000--Sobic002G329600 Sobic001G078000--Sobic006G105900 Sobic001G078000--Sobic002G339200 Sobic001G078000--Sobic010G241000 Sobic001G078000--Sobic009G234600 Sobic001G078000--Sobic005G042000 Sobic001G078000--Sobic006G264201 Sobic001G078000--Sobic006G264900 Sobic001G078000--Sobic007G029300
Octagon: transcription factors


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