Gene annotation
Transcriptome id Sobic.002G033900.1
Synonym Sb02g002960, PSAK
Functional annotation Photosystem I reaction center subunit psaK (PubMedID : 26186930)
photosystem I reaction center subunit, chloroplast precursor, putative, expressed
UniProt C5X9I8
Pfam PF01241
Panther DB PTHR34195 PTHR34195:SF2
NCBI CDD -
KEGG Orthology K02698; photosystem I subunit X
Gene Ontology GO:0016020; membrane GO:0015979photosynthesis GO:0009522photosystem I


Orthologs (automatic annotation)
TAIR AT1G30380 : photosystem I subunit K
RAP-DB (Rice) LOC_Os07g05480.1 : photosystem I reaction center subunit, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a045013
Brachypodium KQK21046
Barley HORVU2Hr1G060480.2 , HORVU2Hr1G060480.1
Wheat TraesCS2B02G272300 , TraesCS2D02G253200 , TraesCS2A02G252600
Populus -


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cDNA sequences
Sobic.002G033900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
2 Sobic.009G229700 Photosystem I reaction center subunit VI(PubMedID : 26186930)@expressed protein K02695: photosystem I subunit VI
3 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
4 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
5 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
6 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
7 Sobic.010G189300 Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08909: light-harvesting complex I chlorophyll a/b binding protein 3
8 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
9 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
10 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
11 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
12 Sobic.007G136900 Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08910: light-harvesting complex I chlorophyll a/b binding protein 4
13 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
14 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
15 Sobic.002G352100 Chorophyll a/b binding protein 7(PubMedID : 26186930)@Chlorophyll a-b binding protein (At)(PubMedID : 27208977)@Chlorophyll binding protein LHCA2 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
16 Sobic.005G152600 - -
17 Sobic.005G042000 Ribulose bisphosphate carboxylase small chain(PubMedID : 26186930)@rubisco small subunit 1A(PubMedID : 26317421)@RuBisCO small chain (Os)(PubMedID : 27208977)@-(PubMedID : 26976818)@CO2 fixation reaction(PubMedID : 21562335)@ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed K01602: ribulose-bisphosphate carboxylase small chain
18 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
19 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
20 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)


Gene co-expression network
sample Sobic002G033900 Sobic002G033900 Sobic006G073500 Sobic006G073500 Sobic002G033900--Sobic006G073500 Sobic009G229700 Sobic009G229700 Sobic002G033900--Sobic009G229700 Sobic001G070500 Sobic001G070500 Sobic002G033900--Sobic001G070500 Sobic001G046900 Sobic001G046900 Sobic002G033900--Sobic001G046900 Sobic005G087000 Sobic005G087000 Sobic002G033900--Sobic005G087000 Sobic004G056900 Sobic004G056900 Sobic002G033900--Sobic004G056900 Sobic010G189300 Sobic010G189300 Sobic002G033900--Sobic010G189300 Sobic010G241000 Sobic010G241000 Sobic002G033900--Sobic010G241000 Sobic003G052500 Sobic003G052500 Sobic002G033900--Sobic003G052500 Sobic006G073500--Sobic002G033900 Sobic006G073500--Sobic009G229700 Sobic006G073500--Sobic005G087000 Sobic006G073500--Sobic001G070500 Sobic006G073500--Sobic001G046900 Sobic006G073500--Sobic004G056900 Sobic006G073500--Sobic010G189300 Sobic006G073500--Sobic010G241000 Sobic006G073500--Sobic003G052500 Sobic009G229700--Sobic006G073500 Sobic009G229700--Sobic002G033900 Sobic009G229700--Sobic005G087000 Sobic009G229700--Sobic001G046900 Sobic009G229700--Sobic001G070500 Sobic009G229700--Sobic010G189300 Sobic009G229700--Sobic004G056900 Sobic005G152600 Sobic005G152600 Sobic009G229700--Sobic005G152600 Sobic002G352100 Sobic002G352100 Sobic009G229700--Sobic002G352100 Sobic001G070500--Sobic002G033900 Sobic001G070500--Sobic006G073500 Sobic001G070500--Sobic004G056900 Sobic001G070500--Sobic010G189300 Sobic001G070500--Sobic009G229700 Sobic002G242000 Sobic002G242000 Sobic001G070500--Sobic002G242000 Sobic001G070500--Sobic001G046900 Sobic007G136900 Sobic007G136900 Sobic001G070500--Sobic007G136900 Sobic001G070500--Sobic003G052500 Sobic001G046900--Sobic002G352100 Sobic001G046900--Sobic004G056900 Sobic001G046900--Sobic007G136900 Sobic001G046900--Sobic005G087000 Sobic001G046900--Sobic006G073500 Sobic001G046900--Sobic002G033900 Sobic001G177000 Sobic001G177000 Sobic001G046900--Sobic001G177000 Sobic004G235200 Sobic004G235200 Sobic001G046900--Sobic004G235200 Sobic001G046900--Sobic002G242000 Sobic005G087000--Sobic006G073500 Sobic005G087000--Sobic009G229700 Sobic005G087000--Sobic001G046900 Sobic005G087000--Sobic002G033900 Sobic005G087000--Sobic004G235200 Sobic005G087000--Sobic010G241000 Sobic005G087000--Sobic002G352100 Sobic009G234600 Sobic009G234600 Sobic005G087000--Sobic009G234600 Sobic005G042000 Sobic005G042000 Sobic005G087000--Sobic005G042000 Sobic004G056900--Sobic002G242000 Sobic004G056900--Sobic001G177000 Sobic004G056900--Sobic001G046900 Sobic004G056900--Sobic001G070500 Sobic004G056900--Sobic002G033900 Sobic004G056900--Sobic007G136900 Sobic004G056900--Sobic006G073500 Sobic004G056900--Sobic010G241000 Sobic004G056900--Sobic003G052500 Sobic010G189300--Sobic001G070500 Sobic010G189300--Sobic007G136900 Sobic010G189300--Sobic001G046900 Sobic010G189300--Sobic006G073500 Sobic010G189300--Sobic002G352100 Sobic010G189300--Sobic002G033900 Sobic010G189300--Sobic009G229700 Sobic010G189300--Sobic004G235200 Sobic010G189300--Sobic005G087000 Sobic010G241000--Sobic009G234600 Sobic002G329600 Sobic002G329600 Sobic010G241000--Sobic002G329600 Sobic010G241000--Sobic001G177000 Sobic010G241000--Sobic003G052500 Sobic001G078000 Sobic001G078000 Sobic010G241000--Sobic001G078000 Sobic010G241000--Sobic004G056900 Sobic010G241000--Sobic001G046900 Sobic010G241000--Sobic006G073500 Sobic002G030200 Sobic002G030200 Sobic010G241000--Sobic002G030200 Sobic003G052500--Sobic010G241000 Sobic003G052500--Sobic006G073500 Sobic003G052500--Sobic004G056900 Sobic003G052500--Sobic002G033900 Sobic006G105900 Sobic006G105900 Sobic003G052500--Sobic006G105900 Sobic003G052500--Sobic001G070500 Sobic003G209800 Sobic003G209800 Sobic003G052500--Sobic003G209800 Sobic003G052500--Sobic004G235200 Sobic001G338700 Sobic001G338700 Sobic003G052500--Sobic001G338700
Octagon: transcription factors


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