Gene annotation
Transcriptome id Sobic.004G056900.1
Synonym Sb04g004770,LHCA1, LHCA1
Functional annotation Chorophyll a/b binding protein 1B-21 (PubMedID : 26186930)
Light harvesting complex-I subunit A4 (PubMedID : 29017446)
chlorophyll A-B binding protein, putative, expressed
UniProt C5XW47
Pfam PF00504
Panther DB PTHR21649 PTHR21649:SF7
NCBI CDD -
KEGG Orthology K08907; light-harvesting complex I chlorophyll a/b binding protein 1
Gene Ontology GO:0016020; membrane GO:0009765photosynthesis, light harvesting


Orthologs (automatic annotation)
TAIR AT3G54890 : photosystem I light harvesting complex gene 1
RAP-DB (Rice) LOC_Os06g21590.1 : chlorophyll A-B binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a048387 , Zm00025a007156 , Zm00025a038456 , Zm00025a038213 , Zm00025a054950 , Zm00025a028623 , Zm00025a007161 , Zm00025a028624 , Zm00025a034789 , Zm00025a019095
Brachypodium KQJ93871 , KQJ91372 , KQK18468 , KQJ90397 , KQK04838
Barley HORVU5Hr1G124160.1 , HORVU7Hr1G046320.6 , HORVU7Hr1G046320.7 , HORVU7Hr1G046320.4 , HORVU7Hr1G046320.5 , HORVU7Hr1G046320.2 , HORVU7Hr1G046320.3 , HORVU7Hr1G046320.1 , HORVU7Hr1G046320.8 , HORVU7Hr1G046320.9 , HORVU5Hr1G087250.2 , HORVU5Hr1G087250.1 , HORVU5Hr1G062240.1 , HORVU5Hr1G062240.3 , HORVU5Hr1G062240.2 , HORVU5Hr1G062240.5 , HORVU5Hr1G062240.4
Wheat TraesCS5A02G213000 , TraesCS6B02G191500 , TraesCS2B02G220100 , TraesCS2A02G187200 , TraesCS5B02G353200 , TraesCS7B02G192500 , TraesCS5B02G210800 , TraesCS5B02G210800 , TraesCS6D02G152700 , TraesCS6A02G159800 , TraesCS7A02G227100 , TraesCS7D02G227300
Populus -


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cDNA sequences
Sobic.004G056900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
2 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
3 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
4 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
5 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
6 Sobic.007G136900 Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08910: light-harvesting complex I chlorophyll a/b binding protein 4
7 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
8 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
9 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
10 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
11 Sobic.009G229700 Photosystem I reaction center subunit VI(PubMedID : 26186930)@expressed protein K02695: photosystem I subunit VI
12 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
13 Sobic.010G189300 Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08909: light-harvesting complex I chlorophyll a/b binding protein 3
14 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
15 Sobic.002G352100 Chorophyll a/b binding protein 7(PubMedID : 26186930)@Chlorophyll a-b binding protein (At)(PubMedID : 27208977)@Chlorophyll binding protein LHCA2 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
16 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
17 Sobic.008G063500 Photosystem I reaction center subunit N(PubMedID : 26186930)@photosystem I reaction center subunit N, chloroplast precursor, putative, expressed K02701: photosystem I subunit PsaN
18 Sobic.003G209900 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Chlorophyll a/b-binding protein(PubMedID : 26317421)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
19 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
20 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -


Gene co-expression network
sample Sobic004G056900 Sobic004G056900 Sobic002G242000 Sobic002G242000 Sobic004G056900--Sobic002G242000 Sobic001G177000 Sobic001G177000 Sobic004G056900--Sobic001G177000 Sobic001G046900 Sobic001G046900 Sobic004G056900--Sobic001G046900 Sobic001G070500 Sobic001G070500 Sobic004G056900--Sobic001G070500 Sobic002G033900 Sobic002G033900 Sobic004G056900--Sobic002G033900 Sobic007G136900 Sobic007G136900 Sobic004G056900--Sobic007G136900 Sobic006G073500 Sobic006G073500 Sobic004G056900--Sobic006G073500 Sobic010G241000 Sobic010G241000 Sobic004G056900--Sobic010G241000 Sobic003G052500 Sobic003G052500 Sobic004G056900--Sobic003G052500 Sobic002G242000--Sobic004G056900 Sobic002G242000--Sobic001G177000 Sobic002G242000--Sobic001G046900 Sobic002G242000--Sobic001G070500 Sobic002G242000--Sobic007G136900 Sobic002G030200 Sobic002G030200 Sobic002G242000--Sobic002G030200 Sobic002G242000--Sobic002G033900 Sobic002G242000--Sobic010G241000 Sobic008G063500 Sobic008G063500 Sobic002G242000--Sobic008G063500 Sobic001G177000--Sobic004G056900 Sobic001G177000--Sobic002G242000 Sobic001G177000--Sobic001G046900 Sobic001G177000--Sobic010G241000 Sobic001G177000--Sobic002G030200 Sobic001G177000--Sobic008G063500 Sobic009G234600 Sobic009G234600 Sobic001G177000--Sobic009G234600 Sobic001G177000--Sobic007G136900 Sobic002G338000 Sobic002G338000 Sobic001G177000--Sobic002G338000 Sobic002G352100 Sobic002G352100 Sobic001G046900--Sobic002G352100 Sobic001G046900--Sobic004G056900 Sobic001G046900--Sobic007G136900 Sobic005G087000 Sobic005G087000 Sobic001G046900--Sobic005G087000 Sobic001G046900--Sobic006G073500 Sobic001G046900--Sobic002G033900 Sobic001G046900--Sobic001G177000 Sobic004G235200 Sobic004G235200 Sobic001G046900--Sobic004G235200 Sobic001G046900--Sobic002G242000 Sobic001G070500--Sobic002G033900 Sobic001G070500--Sobic006G073500 Sobic001G070500--Sobic004G056900 Sobic010G189300 Sobic010G189300 Sobic001G070500--Sobic010G189300 Sobic009G229700 Sobic009G229700 Sobic001G070500--Sobic009G229700 Sobic001G070500--Sobic002G242000 Sobic001G070500--Sobic001G046900 Sobic001G070500--Sobic007G136900 Sobic001G070500--Sobic003G052500 Sobic002G033900--Sobic006G073500 Sobic002G033900--Sobic009G229700 Sobic002G033900--Sobic001G070500 Sobic002G033900--Sobic001G046900 Sobic002G033900--Sobic005G087000 Sobic002G033900--Sobic004G056900 Sobic002G033900--Sobic010G189300 Sobic002G033900--Sobic010G241000 Sobic002G033900--Sobic003G052500 Sobic007G136900--Sobic002G352100 Sobic007G136900--Sobic001G046900 Sobic007G136900--Sobic004G056900 Sobic007G136900--Sobic010G189300 Sobic007G136900--Sobic002G242000 Sobic007G136900--Sobic001G177000 Sobic007G136900--Sobic001G070500 Sobic007G136900--Sobic006G073500 Sobic007G136900--Sobic009G229700 Sobic006G073500--Sobic002G033900 Sobic006G073500--Sobic009G229700 Sobic006G073500--Sobic005G087000 Sobic006G073500--Sobic001G070500 Sobic006G073500--Sobic001G046900 Sobic006G073500--Sobic004G056900 Sobic006G073500--Sobic010G189300 Sobic006G073500--Sobic010G241000 Sobic006G073500--Sobic003G052500 Sobic010G241000--Sobic009G234600 Sobic002G329600 Sobic002G329600 Sobic010G241000--Sobic002G329600 Sobic010G241000--Sobic001G177000 Sobic010G241000--Sobic003G052500 Sobic001G078000 Sobic001G078000 Sobic010G241000--Sobic001G078000 Sobic010G241000--Sobic004G056900 Sobic010G241000--Sobic001G046900 Sobic010G241000--Sobic006G073500 Sobic010G241000--Sobic002G030200 Sobic003G052500--Sobic010G241000 Sobic003G052500--Sobic006G073500 Sobic003G052500--Sobic004G056900 Sobic003G052500--Sobic002G033900 Sobic006G105900 Sobic006G105900 Sobic003G052500--Sobic006G105900 Sobic003G052500--Sobic001G070500 Sobic003G209800 Sobic003G209800 Sobic003G052500--Sobic003G209800 Sobic003G052500--Sobic004G235200 Sobic001G338700 Sobic001G338700 Sobic003G052500--Sobic001G338700
Octagon: transcription factors


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