Gene annotation
Transcriptome id Sobic.008G063500.1,Sobic.008G063500.2
Synonym PSAN, Sb08g005300
Functional annotation Photosystem I reaction center subunit N (PubMedID : 26186930)
photosystem I reaction center subunit N, chloroplast precursor, putative, expressed
UniProt A0A1B6PCC8 , A0A1Z5R5X6
Pfam PF05479
Panther DB PTHR36814 PTHR36814:SF1
NCBI CDD -
KEGG Orthology K02701; photosystem I subunit PsaN
Gene Ontology GO:0015979; photosynthesis GO:0009522photosystem I GO:0005516calmodulin binding


Orthologs (automatic annotation)
TAIR AT5G64040 : photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)
RAP-DB (Rice) LOC_Os12g08770.1 : photosystem I reaction center subunit N, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a025678
Brachypodium -
Barley HORVU2Hr1G019820.1 , HORVU2Hr1G019820.2 , HORVU2Hr1G019820.3
Wheat TraesCS2B02G133500 , TraesCS2A02G114400 , TraesCS2A02G114400 , TraesCS2D02G115200
Populus -


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cDNA sequences
Sobic.008G063500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
2 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
3 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
4 Sobic.007G136900 Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08910: light-harvesting complex I chlorophyll a/b binding protein 4
5 Sobic.003G209900 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Chlorophyll a/b-binding protein(PubMedID : 26317421)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
6 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
7 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
8 Sobic.002G316700 ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma
9 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
10 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
11 Sobic.002G352100 Chorophyll a/b binding protein 7(PubMedID : 26186930)@Chlorophyll a-b binding protein (At)(PubMedID : 27208977)@Chlorophyll binding protein LHCA2 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
12 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
13 Sobic.007G023300 photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed K02723: photosystem II PsbY protein
14 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
15 Sobic.002G033800 expressed protein -
16 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
17 Sobic.002G297300 expressed protein -
18 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
19 Sobic.006G264900 -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed K03403: chlH, magnesium chelatase subunit H
20 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase


Gene co-expression network
sample Sobic008G063500 Sobic008G063500 Sobic001G177000 Sobic001G177000 Sobic008G063500--Sobic001G177000 Sobic002G030200 Sobic002G030200 Sobic008G063500--Sobic002G030200 Sobic002G242000 Sobic002G242000 Sobic008G063500--Sobic002G242000 Sobic007G136900 Sobic007G136900 Sobic008G063500--Sobic007G136900 Sobic003G209900 Sobic003G209900 Sobic008G063500--Sobic003G209900 Sobic004G056900 Sobic004G056900 Sobic008G063500--Sobic004G056900 Sobic001G046900 Sobic001G046900 Sobic008G063500--Sobic001G046900 Sobic002G316700 Sobic002G316700 Sobic008G063500--Sobic002G316700 Sobic002G338000 Sobic002G338000 Sobic008G063500--Sobic002G338000 Sobic001G177000--Sobic004G056900 Sobic001G177000--Sobic002G242000 Sobic001G177000--Sobic001G046900 Sobic010G241000 Sobic010G241000 Sobic001G177000--Sobic010G241000 Sobic001G177000--Sobic002G030200 Sobic001G177000--Sobic008G063500 Sobic009G234600 Sobic009G234600 Sobic001G177000--Sobic009G234600 Sobic001G177000--Sobic007G136900 Sobic001G177000--Sobic002G338000 Sobic010G000500 Sobic010G000500 Sobic002G030200--Sobic010G000500 Sobic002G030200--Sobic001G177000 Sobic002G030200--Sobic002G338000 Sobic002G030200--Sobic002G242000 Sobic002G030200--Sobic010G241000 Sobic003G055300 Sobic003G055300 Sobic002G030200--Sobic003G055300 Sobic002G030200--Sobic008G063500 Sobic002G030200--Sobic001G046900 Sobic002G329600 Sobic002G329600 Sobic002G030200--Sobic002G329600 Sobic002G242000--Sobic004G056900 Sobic002G242000--Sobic001G177000 Sobic002G242000--Sobic001G046900 Sobic001G070500 Sobic001G070500 Sobic002G242000--Sobic001G070500 Sobic002G242000--Sobic007G136900 Sobic002G242000--Sobic002G030200 Sobic002G033900 Sobic002G033900 Sobic002G242000--Sobic002G033900 Sobic002G242000--Sobic010G241000 Sobic002G242000--Sobic008G063500 Sobic002G352100 Sobic002G352100 Sobic007G136900--Sobic002G352100 Sobic007G136900--Sobic001G046900 Sobic007G136900--Sobic004G056900 Sobic010G189300 Sobic010G189300 Sobic007G136900--Sobic010G189300 Sobic007G136900--Sobic002G242000 Sobic007G136900--Sobic001G177000 Sobic007G136900--Sobic001G070500 Sobic006G073500 Sobic006G073500 Sobic007G136900--Sobic006G073500 Sobic009G229700 Sobic009G229700 Sobic007G136900--Sobic009G229700 Sobic003G209900--Sobic008G063500 Sobic003G209900--Sobic004G056900 Sobic003G209900--Sobic007G136900 Sobic003G209900--Sobic001G177000 Sobic003G209900--Sobic002G316700 Sobic003G209900--Sobic002G242000 Sobic003G209900--Sobic001G070500 Sobic003G209900--Sobic001G046900 Sobic003G052500 Sobic003G052500 Sobic003G209900--Sobic003G052500 Sobic004G056900--Sobic002G242000 Sobic004G056900--Sobic001G177000 Sobic004G056900--Sobic001G046900 Sobic004G056900--Sobic001G070500 Sobic004G056900--Sobic002G033900 Sobic004G056900--Sobic007G136900 Sobic004G056900--Sobic006G073500 Sobic004G056900--Sobic010G241000 Sobic004G056900--Sobic003G052500 Sobic001G046900--Sobic002G352100 Sobic001G046900--Sobic004G056900 Sobic001G046900--Sobic007G136900 Sobic005G087000 Sobic005G087000 Sobic001G046900--Sobic005G087000 Sobic001G046900--Sobic006G073500 Sobic001G046900--Sobic002G033900 Sobic001G046900--Sobic001G177000 Sobic004G235200 Sobic004G235200 Sobic001G046900--Sobic004G235200 Sobic001G046900--Sobic002G242000 Sobic007G223500 Sobic007G223500 Sobic002G316700--Sobic007G223500 Sobic009G143100 Sobic009G143100 Sobic002G316700--Sobic009G143100 Sobic007G071500 Sobic007G071500 Sobic002G316700--Sobic007G071500 Sobic002G316700--Sobic003G209900 Sobic007G207800 Sobic007G207800 Sobic002G316700--Sobic007G207800 Sobic002G316700--Sobic008G063500 Sobic008G134800 Sobic008G134800 Sobic002G316700--Sobic008G134800 Sobic002G316700--Sobic001G177000 Sobic002G316700--Sobic004G056900 Sobic002G338000--Sobic010G000500 Sobic002G338000--Sobic003G055300 Sobic001G206200 Sobic001G206200 Sobic002G338000--Sobic001G206200 Sobic002G338000--Sobic002G030200 Sobic002G338000--Sobic001G046900 Sobic002G338000--Sobic002G352100 Sobic002G414400 Sobic002G414400 Sobic002G338000--Sobic002G414400 Sobic002G338000--Sobic001G177000 Sobic002G338000--Sobic009G234600
Octagon: transcription factors


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