Gene annotation
| Transcriptome id | Sobic.007G071500.1 |
|---|---|
| Synonym | PSBR, Sb07g005660 |
| Functional annotation | photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed |
| UniProt | C5YIF3 |
| Pfam | PF04725 |
| Panther DB | PTHR34369 |
| NCBI CDD | - |
| KEGG Orthology | K03541; photosystem II 10kDa protein |
| Gene Ontology | GO:0015979; photosynthesis GO:0009654photosystem II oxygen evolving complex GO:0009523photosystem II |
Orthologs (automatic annotation)
| TAIR | AT1G79040 : photosystem II subunit R |
|---|---|
| RAP-DB (Rice) | LOC_Os08g10020.2 : photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a029941 |
| Brachypodium | KQJ95526 , KQJ95525 |
| Barley | HORVU6Hr1G085170.3 , HORVU6Hr1G085170.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.007G071500 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G143100 | cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed | K02636: cytochrome b6-f complex iron-sulfur subunit |
| 2 | Sobic.006G105900 | Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 3 | Sobic.004G249800 | expressed protein | - |
| 4 | Sobic.004G343300 | -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein | - |
| 5 | Sobic.002G316700 | ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed | K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma |
| 6 | Sobic.008G134800 | shikimate kinase, putative, expressed | - |
| 7 | Sobic.004G035500 | -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed | K03319: divalent anion:Na+ symporter, DASS family |
| 8 | Sobic.003G052500 | Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed | K02699: photosystem I subunit XI |
| 9 | Sobic.001G177000 | Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed | K08913: light-harvesting complex II chlorophyll a/b binding protein 2 |
| 10 | Sobic.003G359100 | sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed | K01100: sedoheptulose-bisphosphatase |
| 11 | Sobic.007G223500 | expressed protein | - |
| 12 | Sobic.003G387800 | unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed | - |
| 13 | Sobic.004G235200 | ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed | K02113: ATPF1D, F-type H+-transporting ATPase subunit delta |
| 14 | Sobic.010G241000 | oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed | K02716: photosystem II oxygen-evolving enhancer protein 1 |
| 15 | Sobic.007G207800 | thylakoid lumen protein, chloroplast precursor, putative, expressed | - |
| 16 | Sobic.004G175500 | OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed | K00434: L-ascorbate peroxidase |
| 17 | Sobic.002G033800 | expressed protein | - |
| 18 | Sobic.004G056900 | Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed | K08907: light-harvesting complex I chlorophyll a/b binding protein 1 |
| 19 | Sobic.006G264900 | -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed | K03403: chlH, magnesium chelatase subunit H |
| 20 | Sobic.006G234100 | shikimate/quinate 5-dehydrogenase, putative, expressed | K02492: glutamyl-tRNA reductase |
Gene co-expression network
Octagon: transcription factors
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