Gene annotation
| Transcriptome id | Sobic.007G223500.2,Sobic.007G223500.3,Sobic.007G223500.4,Sobic.007G223500.1 |
|---|---|
| Synonym | Sb07g028880 |
| Functional annotation | expressed protein |
| UniProt | C5YJN5 |
| Pfam | PF11623 |
| Panther DB | PTHR35494 PTHR35494:SF1 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G23890 : - |
|---|---|
| RAP-DB (Rice) | LOC_Os07g09800.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a018012 |
| Brachypodium | - |
| Barley | HORVU5Hr1G117590.2 , HORVU4Hr1G090890.1 , HORVU4Hr1G090890.2 , HORVU6Hr1G051720.1 , HORVU5Hr1G117590.1 , HORVU3Hr1G065690.1 , HORVU1Hr1G022660.2 , HORVU6Hr1G051720.2 , HORVU1Hr1G022660.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.007G223500 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G316700 | ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed | K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma |
| 2 | Sobic.007G207800 | thylakoid lumen protein, chloroplast precursor, putative, expressed | - |
| 3 | Sobic.004G227200 | ferredoxin-thioredoxin reductase, variable chain, putative, expressed | - |
| 4 | Sobic.008G134800 | shikimate kinase, putative, expressed | - |
| 5 | Sobic.009G143100 | cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed | K02636: cytochrome b6-f complex iron-sulfur subunit |
| 6 | Sobic.001G425400 | high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed | K03841: FBP, fructose-1,6-bisphosphatase I |
| 7 | Sobic.007G071500 | photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed | K03541: photosystem II 10kDa protein |
| 8 | Sobic.003G387800 | unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed | - |
| 9 | Sobic.008G066100 | 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed | - |
| 10 | Sobic.002G030500 | Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed | - |
| 11 | Sobic.004G175500 | OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed | K00434: L-ascorbate peroxidase |
| 12 | Sobic.009G140600 | hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 13 | Sobic.003G359100 | sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed | K01100: sedoheptulose-bisphosphatase |
| 14 | Sobic.009G164300 | riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed | K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II |
| 15 | Sobic.001G098800 | ATP synthase F1, delta subunit family protein, putative, expressed | - |
| 16 | Sobic.006G093900 | enzyme of the cupin superfamily protein, putative, expressed | K06995: uncharacterized protein |
| 17 | Sobic.001G417200 | ATP synthase B chain, chloroplast precursor, putative, expressed | K02109: ATPF0B, F-type H+-transporting ATPase subunit b |
| 18 | Sobic.001G519800 | glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 19 | Sobic.003G435800 | Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain(PubMedID : 26465154)@Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyllide a oxygenase, chloroplast precursor, putative, expressed | K13600: chlorophyllide a oxygenase |
| 20 | Sobic.010G245200 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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