Gene annotation
Transcriptome id Sobic.006G093900.1
Synonym Sb06g017870
Functional annotation enzyme of the cupin superfamily protein, putative, expressed
UniProt A0A1B6PL40
Pfam PF05899
Panther DB PTHR33271 PTHR33271:SF6
NCBI CDD -
KEGG Orthology K06995; uncharacterized protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G10300 : RmlC-like cupins superfamily protein
RAP-DB (Rice) LOC_Os04g36760.1 : enzyme of the cupin superfamily protein, putative, expressed
MaizeGDB (Corn) Zm00025a056138 , Zm00025a011228
Brachypodium KQJ82811
Barley HORVU2Hr1G077890.4 , HORVU2Hr1G077890.3 , HORVU2Hr1G077890.2 , HORVU2Hr1G077760.2 , HORVU2Hr1G077760.1
Wheat TraesCS2D02G311500 , TraesCS2A02G313000 , TraesCS2B02G330100
Populus -


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cDNA sequences
Sobic.006G093900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
2 Sobic.009G140600 hydrolase, alpha/beta fold family domain containing protein, expressed -
3 Sobic.003G412900 NAD(P)H dehydrogenase 18(PubMedID : 26465154)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
4 Sobic.004G227200 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
5 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
6 Sobic.009G043000 thioredoxin, putative, expressed -
7 Sobic.001G102800 expressed protein -
8 Sobic.008G102000 Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed -
9 Sobic.003G002300 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed K15283: solute carrier family 35, member E1
10 Sobic.006G101500 expressed protein -
11 Sobic.010G160700 PEPC(PubMedID : 19549309)@"C4 PTPC , photosynthetic C4 gene"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase 2(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
12 Sobic.007G052400 rubredoxin family protein, putative, expressed -
13 Sobic.009G059300 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
14 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
15 Sobic.002G051100 Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
16 Sobic.007G223500 expressed protein -
17 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
18 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
19 Sobic.001G029100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.001G417200 ATP synthase B chain, chloroplast precursor, putative, expressed K02109: ATPF0B, F-type H+-transporting ATPase subunit b


Gene co-expression network
sample Sobic006G093900 Sobic006G093900 Sobic007G004800 Sobic007G004800 Sobic006G093900--Sobic007G004800 Sobic009G140600 Sobic009G140600 Sobic006G093900--Sobic009G140600 Sobic003G412900 Sobic003G412900 Sobic006G093900--Sobic003G412900 Sobic004G227200 Sobic004G227200 Sobic006G093900--Sobic004G227200 Sobic001G519800 Sobic001G519800 Sobic006G093900--Sobic001G519800 Sobic009G043000 Sobic009G043000 Sobic006G093900--Sobic009G043000 Sobic001G102800 Sobic001G102800 Sobic006G093900--Sobic001G102800 Sobic008G102000 Sobic008G102000 Sobic006G093900--Sobic008G102000 Sobic003G002300 Sobic003G002300 Sobic006G093900--Sobic003G002300 Sobic003G387800 Sobic003G387800 Sobic007G004800--Sobic003G387800 Sobic007G004800--Sobic001G519800 Sobic008G021300 Sobic008G021300 Sobic007G004800--Sobic008G021300 Sobic004G175500 Sobic004G175500 Sobic007G004800--Sobic004G175500 Sobic007G004800--Sobic003G002300 Sobic002G051100 Sobic002G051100 Sobic007G004800--Sobic002G051100 Sobic004G272100 Sobic004G272100 Sobic007G004800--Sobic004G272100 Sobic007G052400 Sobic007G052400 Sobic007G004800--Sobic007G052400 Sobic007G004800--Sobic006G093900 Sobic009G140600--Sobic003G002300 Sobic009G140600--Sobic008G102000 Sobic003G378600 Sobic003G378600 Sobic009G140600--Sobic003G378600 Sobic009G140600--Sobic003G387800 Sobic001G122300 Sobic001G122300 Sobic009G140600--Sobic001G122300 Sobic005G194100 Sobic005G194100 Sobic009G140600--Sobic005G194100 Sobic009G140600--Sobic007G052400 Sobic001G005200 Sobic001G005200 Sobic009G140600--Sobic001G005200 Sobic009G140600--Sobic009G043000 Sobic001G069000 Sobic001G069000 Sobic003G412900--Sobic001G069000 Sobic003G387100 Sobic003G387100 Sobic003G412900--Sobic003G387100 Sobic001G314200 Sobic001G314200 Sobic003G412900--Sobic001G314200 Sobic003G412900--Sobic008G102000 Sobic003G412900--Sobic006G093900 Sobic009G059300 Sobic009G059300 Sobic003G412900--Sobic009G059300 Sobic001G168800 Sobic001G168800 Sobic003G412900--Sobic001G168800 Sobic006G101500 Sobic006G101500 Sobic003G412900--Sobic006G101500 Sobic009G030900 Sobic009G030900 Sobic003G412900--Sobic009G030900 Sobic007G223500 Sobic007G223500 Sobic004G227200--Sobic007G223500 Sobic004G227200--Sobic006G093900 Sobic002G316700 Sobic002G316700 Sobic004G227200--Sobic002G316700 Sobic001G035800 Sobic001G035800 Sobic004G227200--Sobic001G035800 Sobic009G143100 Sobic009G143100 Sobic004G227200--Sobic009G143100 Sobic004G227200--Sobic001G168800 Sobic004G227200--Sobic004G175500 Sobic004G227200--Sobic003G387800 Sobic002G030500 Sobic002G030500 Sobic004G227200--Sobic002G030500 Sobic001G519800--Sobic004G272100 Sobic001G519800--Sobic001G102800 Sobic001G519800--Sobic003G002300 Sobic001G519800--Sobic002G051100 Sobic003G431700 Sobic003G431700 Sobic001G519800--Sobic003G431700 Sobic010G201700 Sobic010G201700 Sobic001G519800--Sobic010G201700 Sobic004G308700 Sobic004G308700 Sobic001G519800--Sobic004G308700 Sobic001G519800--Sobic007G004800 Sobic008G053200 Sobic008G053200 Sobic001G519800--Sobic008G053200 Sobic009G043000--Sobic010G201700 Sobic009G043000--Sobic003G002300 Sobic009G043000--Sobic008G102000 Sobic009G043000--Sobic001G102800 Sobic007G225500 Sobic007G225500 Sobic009G043000--Sobic007G225500 Sobic009G043000--Sobic004G272100 Sobic006G207800 Sobic006G207800 Sobic009G043000--Sobic006G207800 Sobic009G043000--Sobic009G140600 Sobic009G043000--Sobic001G519800 Sobic001G102800--Sobic006G207800 Sobic001G102800--Sobic001G519800 Sobic001G102800--Sobic003G002300 Sobic001G102800--Sobic010G201700 Sobic001G102800--Sobic009G043000 Sobic001G102800--Sobic004G272100 Sobic007G009200 Sobic007G009200 Sobic001G102800--Sobic007G009200 Sobic001G102800--Sobic007G052400 Sobic001G102800--Sobic003G431700 Sobic008G102000--Sobic003G002300 Sobic008G102000--Sobic009G140600 Sobic008G102000--Sobic009G043000 Sobic008G102000--Sobic007G225500 Sobic008G102000--Sobic002G051100 Sobic008G102000--Sobic004G272100 Sobic007G173800 Sobic007G173800 Sobic008G102000--Sobic007G173800 Sobic008G102000--Sobic007G052400 Sobic008G102000--Sobic003G378600 Sobic003G002300--Sobic007G052400 Sobic003G002300--Sobic007G225500 Sobic003G002300--Sobic009G140600 Sobic003G002300--Sobic009G043000 Sobic003G002300--Sobic008G102000 Sobic003G002300--Sobic002G051100 Sobic003G002300--Sobic010G201700 Sobic003G002300--Sobic001G519800 Sobic010G005500 Sobic010G005500 Sobic003G002300--Sobic010G005500
Octagon: transcription factors


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