Gene annotation
Transcriptome id Sobic.001G029100.4,Sobic.001G029100.2,Sobic.001G029100.3
Synonym Sb01g002740
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5WU41
Pfam PF01329
Panther DB PTHR12599 PTHR12599:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008124; 4-alpha-hydroxytetrahydrobiopterin dehydratase activity GO:0006729tetrahydrobiopterin biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G51110 : Transcriptional coactivator/pterin dehydratase
RAP-DB (Rice) ChrSy.fgenesh.mRNA.86 : expressed protein
MaizeGDB (Corn) Zm00025a008876
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
2 Sobic.009G030900 bundle sheath defective protein 2, putative, expressed -
3 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
4 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
5 Sobic.002G033800 expressed protein -
6 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
7 Sobic.002G198600 -(PubMedID : 29017446)@expressed protein -
8 Sobic.006G093900 enzyme of the cupin superfamily protein, putative, expressed K06995: uncharacterized protein
9 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
10 Sobic.007G223500 expressed protein -
11 Sobic.001G417200 ATP synthase B chain, chloroplast precursor, putative, expressed K02109: ATPF0B, F-type H+-transporting ATPase subunit b
12 Sobic.002G152700 rhodanese-like, putative, expressed -
13 Sobic.003G433900 expressed protein -
14 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
15 Sobic.004G227200 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
16 Sobic.002G316700 ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma
17 Sobic.007G004600 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
18 Sobic.004G249800 expressed protein -
19 Sobic.001G308800 expressed protein K18065: Cdc25 family phosphatase
20 Sobic.010G277600 - -


Gene co-expression network
sample Sobic001G029100 Sobic001G029100 Sobic004G175500 Sobic004G175500 Sobic001G029100--Sobic004G175500 Sobic009G030900 Sobic009G030900 Sobic001G029100--Sobic009G030900 Sobic009G143100 Sobic009G143100 Sobic001G029100--Sobic009G143100 Sobic003G387800 Sobic003G387800 Sobic001G029100--Sobic003G387800 Sobic002G033800 Sobic002G033800 Sobic001G029100--Sobic002G033800 Sobic007G004800 Sobic007G004800 Sobic001G029100--Sobic007G004800 Sobic002G198600 Sobic002G198600 Sobic001G029100--Sobic002G198600 Sobic006G093900 Sobic006G093900 Sobic001G029100--Sobic006G093900 Sobic007G071500 Sobic007G071500 Sobic001G029100--Sobic007G071500 Sobic004G175500--Sobic003G387800 Sobic004G343300 Sobic004G343300 Sobic004G175500--Sobic004G343300 Sobic004G175500--Sobic007G004800 Sobic004G175500--Sobic002G198600 Sobic004G249800 Sobic004G249800 Sobic004G175500--Sobic004G249800 Sobic004G175500--Sobic007G071500 Sobic004G175500--Sobic001G029100 Sobic006G103400 Sobic006G103400 Sobic004G175500--Sobic006G103400 Sobic004G175500--Sobic009G030900 Sobic010G005500 Sobic010G005500 Sobic009G030900--Sobic010G005500 Sobic010G277600 Sobic010G277600 Sobic009G030900--Sobic010G277600 Sobic007G052400 Sobic007G052400 Sobic009G030900--Sobic007G052400 Sobic009G183700 Sobic009G183700 Sobic009G030900--Sobic009G183700 Sobic009G030900--Sobic003G387800 Sobic009G059300 Sobic009G059300 Sobic009G030900--Sobic009G059300 Sobic003G002300 Sobic003G002300 Sobic009G030900--Sobic003G002300 Sobic008G171300 Sobic008G171300 Sobic009G030900--Sobic008G171300 Sobic009G030900--Sobic004G175500 Sobic009G143100--Sobic007G071500 Sobic002G316700 Sobic002G316700 Sobic009G143100--Sobic002G316700 Sobic007G223500 Sobic007G223500 Sobic009G143100--Sobic007G223500 Sobic008G134800 Sobic008G134800 Sobic009G143100--Sobic008G134800 Sobic009G143100--Sobic003G387800 Sobic009G140600 Sobic009G140600 Sobic009G143100--Sobic009G140600 Sobic001G417200 Sobic001G417200 Sobic009G143100--Sobic001G417200 Sobic006G105900 Sobic006G105900 Sobic009G143100--Sobic006G105900 Sobic009G143100--Sobic004G249800 Sobic003G387800--Sobic004G175500 Sobic003G387800--Sobic007G004800 Sobic003G387800--Sobic003G002300 Sobic003G387800--Sobic009G140600 Sobic003G387800--Sobic010G005500 Sobic003G387800--Sobic009G030900 Sobic003G387800--Sobic007G052400 Sobic003G387800--Sobic009G143100 Sobic003G387800--Sobic008G134800 Sobic002G033800--Sobic004G343300 Sobic003G132100 Sobic003G132100 Sobic002G033800--Sobic003G132100 Sobic004G023200 Sobic004G023200 Sobic002G033800--Sobic004G023200 Sobic002G033800--Sobic007G071500 Sobic002G152700 Sobic002G152700 Sobic002G033800--Sobic002G152700 Sobic002G033800--Sobic006G103400 Sobic002G033800--Sobic004G175500 Sobic001G448400 Sobic001G448400 Sobic002G033800--Sobic001G448400 Sobic002G033800--Sobic001G029100 Sobic007G004800--Sobic003G387800 Sobic001G519800 Sobic001G519800 Sobic007G004800--Sobic001G519800 Sobic008G021300 Sobic008G021300 Sobic007G004800--Sobic008G021300 Sobic007G004800--Sobic004G175500 Sobic007G004800--Sobic003G002300 Sobic002G051100 Sobic002G051100 Sobic007G004800--Sobic002G051100 Sobic004G272100 Sobic004G272100 Sobic007G004800--Sobic004G272100 Sobic007G004800--Sobic007G052400 Sobic007G004800--Sobic006G093900 Sobic003G433900 Sobic003G433900 Sobic002G198600--Sobic003G433900 Sobic002G198600--Sobic004G175500 Sobic009G091800 Sobic009G091800 Sobic002G198600--Sobic009G091800 Sobic002G198600--Sobic003G132100 Sobic003G386300 Sobic003G386300 Sobic002G198600--Sobic003G386300 Sobic002G198600--Sobic009G030900 Sobic006G248200 Sobic006G248200 Sobic002G198600--Sobic006G248200 Sobic010G011800 Sobic010G011800 Sobic002G198600--Sobic010G011800 Sobic004G311100 Sobic004G311100 Sobic002G198600--Sobic004G311100 Sobic006G093900--Sobic007G004800 Sobic006G093900--Sobic009G140600 Sobic003G412900 Sobic003G412900 Sobic006G093900--Sobic003G412900 Sobic004G227200 Sobic004G227200 Sobic006G093900--Sobic004G227200 Sobic006G093900--Sobic001G519800 Sobic009G043000 Sobic009G043000 Sobic006G093900--Sobic009G043000 Sobic001G102800 Sobic001G102800 Sobic006G093900--Sobic001G102800 Sobic008G102000 Sobic008G102000 Sobic006G093900--Sobic008G102000 Sobic006G093900--Sobic003G002300 Sobic007G071500--Sobic009G143100 Sobic007G071500--Sobic006G105900 Sobic007G071500--Sobic004G249800 Sobic007G071500--Sobic004G343300 Sobic007G071500--Sobic002G316700 Sobic007G071500--Sobic008G134800 Sobic004G035500 Sobic004G035500 Sobic007G071500--Sobic004G035500 Sobic003G052500 Sobic003G052500 Sobic007G071500--Sobic003G052500 Sobic001G177000 Sobic001G177000 Sobic007G071500--Sobic001G177000
Octagon: transcription factors


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