Gene annotation
| Transcriptome id | Sobic.007G004600.1 |
|---|---|
| Synonym | Sb07g000600, ATFD2, FEDA, |
| Functional annotation | Ferredoxin-1 (PubMedID : 26186930) SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed |
| UniProt | C5YLG2 |
| Pfam | PF00111 |
| Panther DB | PTHR19370 PTHR19370:SF110 |
| NCBI CDD | - |
| KEGG Orthology | K02639; ferredoxin |
| Gene Ontology | GO:0009055; electron transfer activity |
Orthologs (automatic annotation)
| TAIR | AT1G60950 : 2Fe-2S ferredoxin-like superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os08g01380.1 : 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a040148 , Zm00025a040147 , Zm00025a040143 |
| Brachypodium | - |
| Barley | HORVU7Hr1G077750.1 , HORVU7Hr1G077740.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.007G004600 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G183700 | XP_002441313.1 plastidic phosphoglycerate kinase(PubMedID : 26904072)@phosphoglycerate kinase(PubMedID : 29017446)@phosphoglycerate kinase protein, putative, expressed | K00927: PGK, phosphoglycerate kinase |
| 2 | Sobic.010G277600 | - | - |
| 3 | Sobic.001G527000 | PsbP-like protein 1 (At)(PubMedID : 27208977)@Photosystem I subunit P-like protein(PubMedID : 29017446)@PsbP, putative, expressed | K02717: photosystem II oxygen-evolving enhancer protein 2 |
| 4 | Sobic.009G091850 | - | - |
| 5 | Sobic.009G030900 | bundle sheath defective protein 2, putative, expressed | - |
| 6 | Sobic.004G311100 | -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed | K01507: inorganic pyrophosphatase |
| 7 | Sobic.004G251500 | -(PubMedID : 29017446)@arsenate reductase, putative, expressed | - |
| 8 | Sobic.003G433900 | expressed protein | - |
| 9 | Sobic.003G387800 | unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed | - |
| 10 | Sobic.001G415400 | PsbP, putative, expressed | - |
| 11 | Sobic.002G277100 | -(PubMedID : 29017446)@triosephosphate isomerase, chloroplast precursor, putative, expressed | K01803: TPI, triosephosphate isomerase (TIM) |
| 12 | Sobic.009G091800 | -(PubMedID : 29017446)@PTAC16, putative, expressed | - |
| 13 | Sobic.010G005500 | ferredoxin--NADP reductase, chloroplast precursor, putative, expressed | K02641: ferredoxin--NADP+ reductase |
| 14 | Sobic.002G152700 | rhodanese-like, putative, expressed | - |
| 15 | Sobic.008G112300 | -(PubMedID : 29017446)@-(PubMedID : 26976818)@citrate transporter, putative, expressed | - |
| 16 | Sobic.007G004800 | Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | K02639: ferredoxin |
| 17 | Sobic.004G239100 | -(PubMedID : 26465154)@expressed protein | - |
| 18 | Sobic.002G198600 | -(PubMedID : 29017446)@expressed protein | - |
| 19 | Sobic.008G051000 | magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed | K03405: chlI, magnesium chelatase subunit I |
| 20 | Sobic.007G052400 | rubredoxin family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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