Gene annotation
| Transcriptome id | Sobic.009G183700.1 |
|---|---|
| Synonym | Sb09g024340, PGK;PGK |
| Functional annotation | XP_002441313.1 plastidic phosphoglycerate kinase (PubMedID : 26904072) phosphoglycerate kinase (PubMedID : 29017446) phosphoglycerate kinase protein, putative, expressed |
| UniProt | Q0H636 , C5Z0B5 |
| Pfam | PF00162 |
| Panther DB | PTHR11406 PTHR11406:SF8 |
| NCBI CDD | - |
| KEGG Orthology | K00927; PGK, phosphoglycerate kinase |
| Gene Ontology | GO:0006096; glycolytic process GO:0004618phosphoglycerate kinase activity |
Orthologs (automatic annotation)
| TAIR | AT1G56190 : Phosphoglycerate kinase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os05g41640.2 : phosphoglycerate kinase protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a044102 , Zm00025a037859 |
| Brachypodium | KQJ93534 , KQJ93535 , KQK05600 , KQK05601 , KQK05602 |
| Barley | HORVU6Hr1G031830.1 , HORVU6Hr1G031830.3 , HORVU6Hr1G031830.2 , HORVU6Hr1G031830.4 , HORVU1Hr1G067300.2 , HORVU1Hr1G067300.1 |
| Wheat | TraesCS1D02G313800 , TraesCS1D02G313800 , TraesCS1B02G325100 , TraesCS6A02G158300 , TraesCS1A02G313300 , TraesCS1A02G313300 , TraesCS6D02G148700 , TraesCS6D02G148700 , TraesCS6B02G187500 , TraesCS6B02G187500 |
| Populus | - |
JBrowse
| Sobic.009G183700 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G277600 | - | - |
| 2 | Sobic.002G277100 | -(PubMedID : 29017446)@triosephosphate isomerase, chloroplast precursor, putative, expressed | K01803: TPI, triosephosphate isomerase (TIM) |
| 3 | Sobic.010G005500 | ferredoxin--NADP reductase, chloroplast precursor, putative, expressed | K02641: ferredoxin--NADP+ reductase |
| 4 | Sobic.003G002300 | Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed | K15283: solute carrier family 35, member E1 |
| 5 | Sobic.007G052400 | rubredoxin family protein, putative, expressed | - |
| 6 | Sobic.007G004600 | Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | K02639: ferredoxin |
| 7 | Sobic.009G030900 | bundle sheath defective protein 2, putative, expressed | - |
| 8 | Sobic.003G387800 | unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed | - |
| 9 | Sobic.009G140600 | hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 10 | Sobic.004G239100 | -(PubMedID : 26465154)@expressed protein | - |
| 11 | Sobic.005G194100 | expressed protein | - |
| 12 | Sobic.008G102000 | Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed | - |
| 13 | Sobic.008G171300 | methyltransferase domain containing protein, putative, expressed | K12502: VTE3, MPBQ/MSBQ methyltransferase |
| 14 | Sobic.007G225500 | expressed protein | - |
| 15 | Sobic.008G172700 | OsDegp15 - Putative Deg protease homologue, expressed | - |
| 16 | Sobic.002G267900 | expressed protein | - |
| 17 | Sobic.004G012900 | expressed protein | - |
| 18 | Sobic.001G489000 | NAD(P)-linked oxidoreductase superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@putativ eribonuclease P, putative, expressed | - |
| 19 | Sobic.007G173800 | uncharacterized protein ycf39, putative, expressed | - |
| 20 | Sobic.002G051100 | Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed | K01807: ribose 5-phosphate isomerase A |
Gene co-expression network
Octagon: transcription factors
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