Gene annotation
Transcriptome id Sobic.009G030900.1
Synonym Sb09g002580
Functional annotation bundle sheath defective protein 2, putative, expressed
UniProt C5YZG9
Pfam -
Panther DB PTHR15852 PTHR15852:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G47650 : DnaJ/Hsp40 cysteine-rich domain superfamily protein
RAP-DB (Rice) LOC_Os06g22690.1 : bundle sheath defective protein 2, putative, expressed
MaizeGDB (Corn) Zm00025a004335
Brachypodium -
Barley -
Wheat TraesCS7A02G341000 , TraesCS7D02G338600 , TraesCS7B02G242200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G005500 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
2 Sobic.010G277600 - -
3 Sobic.007G052400 rubredoxin family protein, putative, expressed -
4 Sobic.009G183700 XP_002441313.1 plastidic phosphoglycerate kinase(PubMedID : 26904072)@phosphoglycerate kinase(PubMedID : 29017446)@phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
5 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
6 Sobic.009G059300 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
7 Sobic.003G002300 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed K15283: solute carrier family 35, member E1
8 Sobic.008G171300 methyltransferase domain containing protein, putative, expressed K12502: VTE3, MPBQ/MSBQ methyltransferase
9 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
10 Sobic.007G004600 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
11 Sobic.004G012900 expressed protein -
12 Sobic.001G029100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.004G239100 -(PubMedID : 26465154)@expressed protein -
14 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
15 Sobic.002G198600 -(PubMedID : 29017446)@expressed protein -
16 Sobic.001G368500 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
17 Sobic.005G194100 expressed protein -
18 Sobic.002G277100 -(PubMedID : 29017446)@triosephosphate isomerase, chloroplast precursor, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
19 Sobic.009G140600 hydrolase, alpha/beta fold family domain containing protein, expressed -
20 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A


Gene co-expression network
sample Sobic009G030900 Sobic009G030900 Sobic010G005500 Sobic010G005500 Sobic009G030900--Sobic010G005500 Sobic010G277600 Sobic010G277600 Sobic009G030900--Sobic010G277600 Sobic007G052400 Sobic007G052400 Sobic009G030900--Sobic007G052400 Sobic009G183700 Sobic009G183700 Sobic009G030900--Sobic009G183700 Sobic003G387800 Sobic003G387800 Sobic009G030900--Sobic003G387800 Sobic009G059300 Sobic009G059300 Sobic009G030900--Sobic009G059300 Sobic003G002300 Sobic003G002300 Sobic009G030900--Sobic003G002300 Sobic008G171300 Sobic008G171300 Sobic009G030900--Sobic008G171300 Sobic004G175500 Sobic004G175500 Sobic009G030900--Sobic004G175500 Sobic010G005500--Sobic007G052400 Sobic010G005500--Sobic003G002300 Sobic010G005500--Sobic009G030900 Sobic010G005500--Sobic009G183700 Sobic002G277100 Sobic002G277100 Sobic010G005500--Sobic002G277100 Sobic010G005500--Sobic003G387800 Sobic004G012900 Sobic004G012900 Sobic010G005500--Sobic004G012900 Sobic010G005500--Sobic010G277600 Sobic010G005500--Sobic009G059300 Sobic010G277600--Sobic009G183700 Sobic010G277600--Sobic009G030900 Sobic010G277600--Sobic010G005500 Sobic010G277600--Sobic007G052400 Sobic004G239100 Sobic004G239100 Sobic010G277600--Sobic004G239100 Sobic010G277600--Sobic004G012900 Sobic010G277600--Sobic002G277100 Sobic007G004600 Sobic007G004600 Sobic010G277600--Sobic007G004600 Sobic007G173800 Sobic007G173800 Sobic010G277600--Sobic007G173800 Sobic007G052400--Sobic010G005500 Sobic007G052400--Sobic003G002300 Sobic007G052400--Sobic004G012900 Sobic007G052400--Sobic008G171300 Sobic007G225500 Sobic007G225500 Sobic007G052400--Sobic007G225500 Sobic007G052400--Sobic009G183700 Sobic007G052400--Sobic009G030900 Sobic008G102000 Sobic008G102000 Sobic007G052400--Sobic008G102000 Sobic002G233700 Sobic002G233700 Sobic007G052400--Sobic002G233700 Sobic009G183700--Sobic010G277600 Sobic009G183700--Sobic002G277100 Sobic009G183700--Sobic010G005500 Sobic009G183700--Sobic003G002300 Sobic009G183700--Sobic007G052400 Sobic009G183700--Sobic007G004600 Sobic009G183700--Sobic009G030900 Sobic009G183700--Sobic003G387800 Sobic009G140600 Sobic009G140600 Sobic009G183700--Sobic009G140600 Sobic003G387800--Sobic004G175500 Sobic007G004800 Sobic007G004800 Sobic003G387800--Sobic007G004800 Sobic003G387800--Sobic003G002300 Sobic003G387800--Sobic009G140600 Sobic003G387800--Sobic010G005500 Sobic003G387800--Sobic009G030900 Sobic003G387800--Sobic007G052400 Sobic009G143100 Sobic009G143100 Sobic003G387800--Sobic009G143100 Sobic008G134800 Sobic008G134800 Sobic003G387800--Sobic008G134800 Sobic003G387100 Sobic003G387100 Sobic009G059300--Sobic003G387100 Sobic009G059300--Sobic004G012900 Sobic009G059300--Sobic010G005500 Sobic006G207800 Sobic006G207800 Sobic009G059300--Sobic006G207800 Sobic009G059300--Sobic008G171300 Sobic001G309300 Sobic001G309300 Sobic009G059300--Sobic001G309300 Sobic009G059300--Sobic007G052400 Sobic009G059300--Sobic009G030900 Sobic008G073100 Sobic008G073100 Sobic009G059300--Sobic008G073100 Sobic003G002300--Sobic007G052400 Sobic003G002300--Sobic007G225500 Sobic003G002300--Sobic009G140600 Sobic009G043000 Sobic009G043000 Sobic003G002300--Sobic009G043000 Sobic003G002300--Sobic008G102000 Sobic002G051100 Sobic002G051100 Sobic003G002300--Sobic002G051100 Sobic010G201700 Sobic010G201700 Sobic003G002300--Sobic010G201700 Sobic001G519800 Sobic001G519800 Sobic003G002300--Sobic001G519800 Sobic003G002300--Sobic010G005500 Sobic008G171300--Sobic002G233700 Sobic008G171300--Sobic007G052400 Sobic008G171300--Sobic007G225500 Sobic008G171300--Sobic003G002300 Sobic008G171300--Sobic008G102000 Sobic008G171300--Sobic009G059300 Sobic008G171300--Sobic004G012900 Sobic008G171300--Sobic009G140600 Sobic008G171300--Sobic009G183700 Sobic004G175500--Sobic003G387800 Sobic004G343300 Sobic004G343300 Sobic004G175500--Sobic004G343300 Sobic004G175500--Sobic007G004800 Sobic002G198600 Sobic002G198600 Sobic004G175500--Sobic002G198600 Sobic004G249800 Sobic004G249800 Sobic004G175500--Sobic004G249800 Sobic007G071500 Sobic007G071500 Sobic004G175500--Sobic007G071500 Sobic001G029100 Sobic001G029100 Sobic004G175500--Sobic001G029100 Sobic006G103400 Sobic006G103400 Sobic004G175500--Sobic006G103400 Sobic004G175500--Sobic009G030900
Octagon: transcription factors


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