Gene annotation
Transcriptome id Sobic.007G004800.1
Synonym ATFD2, FEDA, Sb07g000620
Functional annotation Ferredoxin-1 (PubMedID : 26186930)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
2Fe-2S iron-sulfur cluster binding domain containing protein, expressed
UniProt A0A1B6PES8
Pfam PF00111
Panther DB PTHR19370 PTHR19370:SF110
NCBI CDD -
KEGG Orthology K02639; ferredoxin
Gene Ontology GO:0009055; electron transfer activity


Orthologs (automatic annotation)
TAIR AT1G60950 : 2Fe-2S ferredoxin-like superfamily protein
RAP-DB (Rice) LOC_Os08g01380.1 : 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a040148 , Zm00025a040147 , Zm00025a040143
Brachypodium KQJ94784
Barley HORVU7Hr1G077750.1 , HORVU7Hr1G077740.1
Wheat -
Populus -


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cDNA sequences
Sobic.007G004800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
2 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
3 Sobic.008G021300 Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed -
4 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
5 Sobic.003G002300 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed K15283: solute carrier family 35, member E1
6 Sobic.002G051100 Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
7 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
8 Sobic.007G052400 rubredoxin family protein, putative, expressed -
9 Sobic.006G093900 enzyme of the cupin superfamily protein, putative, expressed K06995: uncharacterized protein
10 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
11 Sobic.001G102800 expressed protein -
12 Sobic.010G160700 PEPC(PubMedID : 19549309)@"C4 PTPC , photosynthetic C4 gene"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase 2(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
13 Sobic.009G030900 bundle sheath defective protein 2, putative, expressed -
14 Sobic.010G005500 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
15 Sobic.004G035500 -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
16 Sobic.008G102000 Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed -
17 Sobic.009G043000 thioredoxin, putative, expressed -
18 Sobic.006G272900 peroxidase activity(PubMedID : 29491869)@glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
19 Sobic.009G183700 XP_002441313.1 plastidic phosphoglycerate kinase(PubMedID : 26904072)@phosphoglycerate kinase(PubMedID : 29017446)@phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
20 Sobic.009G125400 FZL, putative, expressed -


Gene co-expression network
sample Sobic007G004800 Sobic007G004800 Sobic003G387800 Sobic003G387800 Sobic007G004800--Sobic003G387800 Sobic001G519800 Sobic001G519800 Sobic007G004800--Sobic001G519800 Sobic008G021300 Sobic008G021300 Sobic007G004800--Sobic008G021300 Sobic004G175500 Sobic004G175500 Sobic007G004800--Sobic004G175500 Sobic003G002300 Sobic003G002300 Sobic007G004800--Sobic003G002300 Sobic002G051100 Sobic002G051100 Sobic007G004800--Sobic002G051100 Sobic004G272100 Sobic004G272100 Sobic007G004800--Sobic004G272100 Sobic007G052400 Sobic007G052400 Sobic007G004800--Sobic007G052400 Sobic006G093900 Sobic006G093900 Sobic007G004800--Sobic006G093900 Sobic003G387800--Sobic004G175500 Sobic003G387800--Sobic007G004800 Sobic003G387800--Sobic003G002300 Sobic009G140600 Sobic009G140600 Sobic003G387800--Sobic009G140600 Sobic010G005500 Sobic010G005500 Sobic003G387800--Sobic010G005500 Sobic009G030900 Sobic009G030900 Sobic003G387800--Sobic009G030900 Sobic003G387800--Sobic007G052400 Sobic009G143100 Sobic009G143100 Sobic003G387800--Sobic009G143100 Sobic008G134800 Sobic008G134800 Sobic003G387800--Sobic008G134800 Sobic001G519800--Sobic004G272100 Sobic001G102800 Sobic001G102800 Sobic001G519800--Sobic001G102800 Sobic001G519800--Sobic003G002300 Sobic001G519800--Sobic002G051100 Sobic003G431700 Sobic003G431700 Sobic001G519800--Sobic003G431700 Sobic010G201700 Sobic010G201700 Sobic001G519800--Sobic010G201700 Sobic004G308700 Sobic004G308700 Sobic001G519800--Sobic004G308700 Sobic001G519800--Sobic007G004800 Sobic008G053200 Sobic008G053200 Sobic001G519800--Sobic008G053200 Sobic003G303700 Sobic003G303700 Sobic008G021300--Sobic003G303700 Sobic002G152700 Sobic002G152700 Sobic008G021300--Sobic002G152700 Sobic008G021300--Sobic007G004800 Sobic006G272900 Sobic006G272900 Sobic008G021300--Sobic006G272900 Sobic004G035500 Sobic004G035500 Sobic008G021300--Sobic004G035500 Sobic008G021300--Sobic010G201700 Sobic008G021300--Sobic001G519800 Sobic008G021300--Sobic001G102800 Sobic009G043000 Sobic009G043000 Sobic008G021300--Sobic009G043000 Sobic004G175500--Sobic003G387800 Sobic004G343300 Sobic004G343300 Sobic004G175500--Sobic004G343300 Sobic004G175500--Sobic007G004800 Sobic002G198600 Sobic002G198600 Sobic004G175500--Sobic002G198600 Sobic004G249800 Sobic004G249800 Sobic004G175500--Sobic004G249800 Sobic007G071500 Sobic007G071500 Sobic004G175500--Sobic007G071500 Sobic001G029100 Sobic001G029100 Sobic004G175500--Sobic001G029100 Sobic006G103400 Sobic006G103400 Sobic004G175500--Sobic006G103400 Sobic004G175500--Sobic009G030900 Sobic003G002300--Sobic007G052400 Sobic007G225500 Sobic007G225500 Sobic003G002300--Sobic007G225500 Sobic003G002300--Sobic009G140600 Sobic003G002300--Sobic009G043000 Sobic008G102000 Sobic008G102000 Sobic003G002300--Sobic008G102000 Sobic003G002300--Sobic002G051100 Sobic003G002300--Sobic010G201700 Sobic003G002300--Sobic001G519800 Sobic003G002300--Sobic010G005500 Sobic002G051100--Sobic003G002300 Sobic002G051100--Sobic001G519800 Sobic002G051100--Sobic004G272100 Sobic002G051100--Sobic008G102000 Sobic001G489000 Sobic001G489000 Sobic002G051100--Sobic001G489000 Sobic002G051100--Sobic009G140600 Sobic002G051100--Sobic010G201700 Sobic002G051100--Sobic003G387800 Sobic002G051100--Sobic007G004800 Sobic004G272100--Sobic004G308700 Sobic004G272100--Sobic010G201700 Sobic004G272100--Sobic001G519800 Sobic004G272100--Sobic002G051100 Sobic004G272100--Sobic003G002300 Sobic004G272100--Sobic008G102000 Sobic004G272100--Sobic009G043000 Sobic004G272100--Sobic001G102800 Sobic008G066100 Sobic008G066100 Sobic004G272100--Sobic008G066100 Sobic007G052400--Sobic010G005500 Sobic007G052400--Sobic003G002300 Sobic004G012900 Sobic004G012900 Sobic007G052400--Sobic004G012900 Sobic008G171300 Sobic008G171300 Sobic007G052400--Sobic008G171300 Sobic007G052400--Sobic007G225500 Sobic009G183700 Sobic009G183700 Sobic007G052400--Sobic009G183700 Sobic007G052400--Sobic009G030900 Sobic007G052400--Sobic008G102000 Sobic002G233700 Sobic002G233700 Sobic007G052400--Sobic002G233700 Sobic006G093900--Sobic007G004800 Sobic006G093900--Sobic009G140600 Sobic003G412900 Sobic003G412900 Sobic006G093900--Sobic003G412900 Sobic004G227200 Sobic004G227200 Sobic006G093900--Sobic004G227200 Sobic006G093900--Sobic001G519800 Sobic006G093900--Sobic009G043000 Sobic006G093900--Sobic001G102800 Sobic006G093900--Sobic008G102000 Sobic006G093900--Sobic003G002300
Octagon: transcription factors


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