Gene annotation
Transcriptome id Sobic.004G308700.1
Synonym LHCA5, Sb04g034130
Functional annotation photosystem I light harvesting complex gene 5 (PubMedID : 26465154)
chlorophyll A-B binding protein, putative, expressed
UniProt C5XSU5
Pfam PF00504
Panther DB PTHR21649 PTHR21649:SF23
NCBI CDD -
KEGG Orthology K08911; light-harvesting complex I chlorophyll a/b binding protein 5
Gene Ontology GO:0016020; membrane GO:0009765photosynthesis, light harvesting


Orthologs (automatic annotation)
TAIR AT1G45474 : photosystem I light harvesting complex gene 5
RAP-DB (Rice) LOC_Os02g52650.1 : chlorophyll A-B binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a022218
Brachypodium -
Barley -
Wheat TraesCS6A02G319700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
2 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
3 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
4 Sobic.010G201700 GA16396-PA, putative, expressed -
5 Sobic.001G425400 high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
6 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
7 Sobic.001G102800 expressed protein -
8 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
9 Sobic.002G051100 Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
10 Sobic.008G102000 Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed -
11 Sobic.003G002300 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed K15283: solute carrier family 35, member E1
12 Sobic.008G053200 fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
13 Sobic.003G359100 sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed K01100: sedoheptulose-bisphosphatase
14 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
15 Sobic.002G098800 peroxiredoxin, putative, expressed -
16 Sobic.007G207800 thylakoid lumen protein, chloroplast precursor, putative, expressed -
17 Sobic.002G036000 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
18 Sobic.009G125400 FZL, putative, expressed -
19 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase
20 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -


Gene co-expression network
sample Sobic004G308700 Sobic004G308700 Sobic004G272100 Sobic004G272100 Sobic004G308700--Sobic004G272100 Sobic008G066100 Sobic008G066100 Sobic004G308700--Sobic008G066100 Sobic001G519800 Sobic001G519800 Sobic004G308700--Sobic001G519800 Sobic010G201700 Sobic010G201700 Sobic004G308700--Sobic010G201700 Sobic001G425400 Sobic001G425400 Sobic004G308700--Sobic001G425400 Sobic003G431700 Sobic003G431700 Sobic004G308700--Sobic003G431700 Sobic001G102800 Sobic001G102800 Sobic004G308700--Sobic001G102800 Sobic007G004800 Sobic007G004800 Sobic004G308700--Sobic007G004800 Sobic002G051100 Sobic002G051100 Sobic004G308700--Sobic002G051100 Sobic004G272100--Sobic004G308700 Sobic004G272100--Sobic010G201700 Sobic004G272100--Sobic001G519800 Sobic004G272100--Sobic002G051100 Sobic003G002300 Sobic003G002300 Sobic004G272100--Sobic003G002300 Sobic008G102000 Sobic008G102000 Sobic004G272100--Sobic008G102000 Sobic009G043000 Sobic009G043000 Sobic004G272100--Sobic009G043000 Sobic004G272100--Sobic001G102800 Sobic004G272100--Sobic008G066100 Sobic008G066100--Sobic001G425400 Sobic003G359100 Sobic003G359100 Sobic008G066100--Sobic003G359100 Sobic008G066100--Sobic004G308700 Sobic007G207800 Sobic007G207800 Sobic008G066100--Sobic007G207800 Sobic008G134800 Sobic008G134800 Sobic008G066100--Sobic008G134800 Sobic008G066100--Sobic004G272100 Sobic004G035500 Sobic004G035500 Sobic008G066100--Sobic004G035500 Sobic007G223500 Sobic007G223500 Sobic008G066100--Sobic007G223500 Sobic002G030500 Sobic002G030500 Sobic008G066100--Sobic002G030500 Sobic001G519800--Sobic004G272100 Sobic001G519800--Sobic001G102800 Sobic001G519800--Sobic003G002300 Sobic001G519800--Sobic002G051100 Sobic001G519800--Sobic003G431700 Sobic001G519800--Sobic010G201700 Sobic001G519800--Sobic004G308700 Sobic001G519800--Sobic007G004800 Sobic008G053200 Sobic008G053200 Sobic001G519800--Sobic008G053200 Sobic010G201700--Sobic009G043000 Sobic010G201700--Sobic004G272100 Sobic010G201700--Sobic003G002300 Sobic010G201700--Sobic001G102800 Sobic010G201700--Sobic001G519800 Sobic007G225500 Sobic007G225500 Sobic010G201700--Sobic007G225500 Sobic010G201700--Sobic008G102000 Sobic006G207800 Sobic006G207800 Sobic010G201700--Sobic006G207800 Sobic010G201700--Sobic004G308700 Sobic001G425400--Sobic008G066100 Sobic001G425400--Sobic003G359100 Sobic001G425400--Sobic008G134800 Sobic001G425400--Sobic007G207800 Sobic001G425400--Sobic004G308700 Sobic001G425400--Sobic007G223500 Sobic001G425400--Sobic004G272100 Sobic001G425400--Sobic004G035500 Sobic001G098800 Sobic001G098800 Sobic001G425400--Sobic001G098800 Sobic003G431700--Sobic001G519800 Sobic003G398800 Sobic003G398800 Sobic003G431700--Sobic003G398800 Sobic003G431700--Sobic006G207800 Sobic002G370600 Sobic002G370600 Sobic003G431700--Sobic002G370600 Sobic006G238200 Sobic006G238200 Sobic003G431700--Sobic006G238200 Sobic003G431700--Sobic004G308700 Sobic003G431700--Sobic004G272100 Sobic010G181300 Sobic010G181300 Sobic003G431700--Sobic010G181300 Sobic003G431700--Sobic001G102800 Sobic001G102800--Sobic006G207800 Sobic001G102800--Sobic001G519800 Sobic001G102800--Sobic003G002300 Sobic001G102800--Sobic010G201700 Sobic001G102800--Sobic009G043000 Sobic001G102800--Sobic004G272100 Sobic007G009200 Sobic007G009200 Sobic001G102800--Sobic007G009200 Sobic007G052400 Sobic007G052400 Sobic001G102800--Sobic007G052400 Sobic001G102800--Sobic003G431700 Sobic003G387800 Sobic003G387800 Sobic007G004800--Sobic003G387800 Sobic007G004800--Sobic001G519800 Sobic008G021300 Sobic008G021300 Sobic007G004800--Sobic008G021300 Sobic004G175500 Sobic004G175500 Sobic007G004800--Sobic004G175500 Sobic007G004800--Sobic003G002300 Sobic007G004800--Sobic002G051100 Sobic007G004800--Sobic004G272100 Sobic007G004800--Sobic007G052400 Sobic006G093900 Sobic006G093900 Sobic007G004800--Sobic006G093900 Sobic002G051100--Sobic003G002300 Sobic002G051100--Sobic001G519800 Sobic002G051100--Sobic004G272100 Sobic002G051100--Sobic008G102000 Sobic001G489000 Sobic001G489000 Sobic002G051100--Sobic001G489000 Sobic009G140600 Sobic009G140600 Sobic002G051100--Sobic009G140600 Sobic002G051100--Sobic010G201700 Sobic002G051100--Sobic003G387800 Sobic002G051100--Sobic007G004800
Octagon: transcription factors


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