Gene annotation
Transcriptome id Sobic.002G036000.3,Sobic.002G036000.4,Sobic.002G036000.1,Sobic.002G036000.2
Synonym GOX, Sb02g003120
Functional annotation - (PubMedID : 26976818)
hydroxyacid oxidase 1, putative, expressed
UniProt A0A1B6Q914 , A0A1B6Q918
Pfam PF01070
Panther DB PTHR10578 PTHR10578:SF80
NCBI CDD -
KEGG Orthology K11517; (S)-2-hydroxy-acid oxidase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT3G14420 : Aldolase-type TIM barrel family protein
RAP-DB (Rice) LOC_Os07g05820.2 : hydroxyacid oxidase 1, putative, expressed
MaizeGDB (Corn) Zm00025a045035 , Zm00025a009719 , Zm00025a033138
Brachypodium KQK21065 , KQK12857 , KQK12856 , KQK21064
Barley HORVU2Hr1G060010.5 , HORVU0Hr1G013900.14 , HORVU2Hr1G060010.4 , HORVU2Hr1G060010.6 , HORVU2Hr1G060010.1 , HORVU2Hr1G060010.3 , HORVU2Hr1G060010.2 , HORVU0Hr1G013900.7 , HORVU0Hr1G013900.6 , HORVU0Hr1G013900.5 , HORVU0Hr1G013900.4 , HORVU0Hr1G013900.3 , HORVU0Hr1G013900.2 , HORVU0Hr1G013900.1 , HORVU0Hr1G013900.9 , HORVU0Hr1G013900.8 , HORVU0Hr1G013900.15 , HORVU0Hr1G013900.17 , HORVU0Hr1G013900.16 , HORVU0Hr1G013900.13 , HORVU0Hr1G013900.12 , HORVU0Hr1G013900.11 , HORVU0Hr1G013900.10
Wheat TraesCS5D02G432900 , TraesCS5A02G424400 , TraesCS2B02G264100 , TraesCS2B02G264100 , TraesCS5D02G432900 , TraesCS5B02G426500 , TraesCS5B02G426500 , TraesCS2D02G251800 , TraesCS2D02G251800 , TraesCS2A02G250800 , TraesCS2A02G250800
Populus PNT59169 , PNT59168 , PNT59170 , PNT59171 , PNT59172


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cDNA sequences
Sobic.002G036000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G053200 fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
2 Sobic.001G102800 expressed protein -
3 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
4 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
5 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
6 Sobic.006G101500 expressed protein -
7 Sobic.003G443500 cyclase/dehydrase family protein, expressed -
8 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
9 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
10 Sobic.001G129000 DnaK family protein, putative, expressed -
11 Sobic.002G324500 PPDK regulatory protein(PubMedID : 26465154)@PPDK regulatory protein(PubMedID : 26465154)@-(PubMedID : 26976818)@pyruvate orthophosphate dikinase regulatory protein(PubMedID : 27016024)@pyruvate Pi dikinase regulatory protein, putative, expressed K09773: [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase
12 Sobic.001G158900 helix-loop-helix DNA-binding domain containing protein, expressed K16189: phytochrome-interacting factor 4
13 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase
14 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
15 Sobic.001G391900 nifU, putative, expressed -
16 Sobic.008G116300 expressed protein -
17 Sobic.001G317400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
19 Sobic.005G089600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
20 Sobic.003G431900 -(PubMedID : 26976818)@expressed protein K07562: nonsense-mediated mRNA decay protein 3


Gene co-expression network
sample Sobic002G036000 Sobic002G036000 Sobic008G053200 Sobic008G053200 Sobic002G036000--Sobic008G053200 Sobic001G102800 Sobic001G102800 Sobic002G036000--Sobic001G102800 Sobic004G308700 Sobic004G308700 Sobic002G036000--Sobic004G308700 Sobic001G519800 Sobic001G519800 Sobic002G036000--Sobic001G519800 Sobic003G431700 Sobic003G431700 Sobic002G036000--Sobic003G431700 Sobic006G101500 Sobic006G101500 Sobic002G036000--Sobic006G101500 Sobic003G443500 Sobic003G443500 Sobic002G036000--Sobic003G443500 Sobic004G272100 Sobic004G272100 Sobic002G036000--Sobic004G272100 Sobic008G066100 Sobic008G066100 Sobic002G036000--Sobic008G066100 Sobic003G431900 Sobic003G431900 Sobic008G053200--Sobic003G431900 Sobic008G053200--Sobic001G519800 Sobic003G234200 Sobic003G234200 Sobic008G053200--Sobic003G234200 Sobic008G053200--Sobic002G036000 Sobic004G238600 Sobic004G238600 Sobic008G053200--Sobic004G238600 Sobic004G283100 Sobic004G283100 Sobic008G053200--Sobic004G283100 Sobic008G053200--Sobic004G272100 Sobic008G053200--Sobic004G308700 Sobic005G089600 Sobic005G089600 Sobic008G053200--Sobic005G089600 Sobic006G207800 Sobic006G207800 Sobic001G102800--Sobic006G207800 Sobic001G102800--Sobic001G519800 Sobic003G002300 Sobic003G002300 Sobic001G102800--Sobic003G002300 Sobic010G201700 Sobic010G201700 Sobic001G102800--Sobic010G201700 Sobic009G043000 Sobic009G043000 Sobic001G102800--Sobic009G043000 Sobic001G102800--Sobic004G272100 Sobic007G009200 Sobic007G009200 Sobic001G102800--Sobic007G009200 Sobic007G052400 Sobic007G052400 Sobic001G102800--Sobic007G052400 Sobic001G102800--Sobic003G431700 Sobic004G308700--Sobic004G272100 Sobic004G308700--Sobic008G066100 Sobic004G308700--Sobic001G519800 Sobic004G308700--Sobic010G201700 Sobic001G425400 Sobic001G425400 Sobic004G308700--Sobic001G425400 Sobic004G308700--Sobic003G431700 Sobic004G308700--Sobic001G102800 Sobic007G004800 Sobic007G004800 Sobic004G308700--Sobic007G004800 Sobic002G051100 Sobic002G051100 Sobic004G308700--Sobic002G051100 Sobic001G519800--Sobic004G272100 Sobic001G519800--Sobic001G102800 Sobic001G519800--Sobic003G002300 Sobic001G519800--Sobic002G051100 Sobic001G519800--Sobic003G431700 Sobic001G519800--Sobic010G201700 Sobic001G519800--Sobic004G308700 Sobic001G519800--Sobic007G004800 Sobic001G519800--Sobic008G053200 Sobic003G431700--Sobic001G519800 Sobic003G398800 Sobic003G398800 Sobic003G431700--Sobic003G398800 Sobic003G431700--Sobic006G207800 Sobic002G370600 Sobic002G370600 Sobic003G431700--Sobic002G370600 Sobic006G238200 Sobic006G238200 Sobic003G431700--Sobic006G238200 Sobic003G431700--Sobic004G308700 Sobic003G431700--Sobic004G272100 Sobic010G181300 Sobic010G181300 Sobic003G431700--Sobic010G181300 Sobic003G431700--Sobic001G102800 Sobic003G387100 Sobic003G387100 Sobic006G101500--Sobic003G387100 Sobic002G102200 Sobic002G102200 Sobic006G101500--Sobic002G102200 Sobic001G183000 Sobic001G183000 Sobic006G101500--Sobic001G183000 Sobic004G211600 Sobic004G211600 Sobic006G101500--Sobic004G211600 Sobic001G134700 Sobic001G134700 Sobic006G101500--Sobic001G134700 Sobic006G101500--Sobic003G431700 Sobic003G412900 Sobic003G412900 Sobic006G101500--Sobic003G412900 Sobic006G093900 Sobic006G093900 Sobic006G101500--Sobic006G093900 Sobic008G006100 Sobic008G006100 Sobic006G101500--Sobic008G006100 Sobic003G443500--Sobic002G036000 Sobic001G391900 Sobic001G391900 Sobic003G443500--Sobic001G391900 Sobic001G073900 Sobic001G073900 Sobic003G443500--Sobic001G073900 Sobic001G065600 Sobic001G065600 Sobic003G443500--Sobic001G065600 Sobic003G443500--Sobic002G102200 Sobic008G001900 Sobic008G001900 Sobic003G443500--Sobic008G001900 Sobic003G443500--Sobic006G101500 Sobic005G188600 Sobic005G188600 Sobic003G443500--Sobic005G188600 Sobic001G317400 Sobic001G317400 Sobic003G443500--Sobic001G317400 Sobic004G272100--Sobic004G308700 Sobic004G272100--Sobic010G201700 Sobic004G272100--Sobic001G519800 Sobic004G272100--Sobic002G051100 Sobic004G272100--Sobic003G002300 Sobic008G102000 Sobic008G102000 Sobic004G272100--Sobic008G102000 Sobic004G272100--Sobic009G043000 Sobic004G272100--Sobic001G102800 Sobic004G272100--Sobic008G066100 Sobic008G066100--Sobic001G425400 Sobic003G359100 Sobic003G359100 Sobic008G066100--Sobic003G359100 Sobic008G066100--Sobic004G308700 Sobic007G207800 Sobic007G207800 Sobic008G066100--Sobic007G207800 Sobic008G134800 Sobic008G134800 Sobic008G066100--Sobic008G134800 Sobic008G066100--Sobic004G272100 Sobic004G035500 Sobic004G035500 Sobic008G066100--Sobic004G035500 Sobic007G223500 Sobic007G223500 Sobic008G066100--Sobic007G223500 Sobic002G030500 Sobic002G030500 Sobic008G066100--Sobic002G030500
Octagon: transcription factors


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