Gene annotation
| Transcriptome id | Sobic.003G431900.1 |
|---|---|
| Synonym | MEP |
| Functional annotation | - (PubMedID : 26976818) expressed protein |
| UniProt | A0A1B6Q8B0 |
| Pfam | PF11891 |
| Panther DB | PTHR31620 PTHR31620:SF7 |
| NCBI CDD | - |
| KEGG Orthology | K07562; nonsense-mediated mRNA decay protein 3 |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G12470 : Protein of unknown function (DUF3411) |
|---|---|
| RAP-DB (Rice) | LOC_Os01g72710.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a025929 |
| Brachypodium | PNT71395 , KQK06555 |
| Barley | - |
| Wheat | TraesCS1B02G254100 , TraesCS1A02G242600 , TraesCS1D02G242600 |
| Populus | - |
JBrowse
| Sobic.003G431900 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G053200 | fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed | K01623: fructose-bisphosphate aldolase, class I |
| 2 | Sobic.003G234200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed | K01673: cynT, carbonic anhydrase |
| 3 | Sobic.004G305800 | expressed protein | - |
| 4 | Sobic.003G256700 | expressed protein | - |
| 5 | Sobic.001G519800 | glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 6 | Sobic.005G165500 | OsSub17 - Putative Subtilisin homologue, expressed | - |
| 7 | Sobic.002G324500 | PPDK regulatory protein(PubMedID : 26465154)@PPDK regulatory protein(PubMedID : 26465154)@-(PubMedID : 26976818)@pyruvate orthophosphate dikinase regulatory protein(PubMedID : 27016024)@pyruvate Pi dikinase regulatory protein, putative, expressed | K09773: [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase |
| 8 | Sobic.004G308700 | photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08911: light-harvesting complex I chlorophyll a/b binding protein 5 |
| 9 | Sobic.004G272100 | phosphoribulokinase/Uridine kinase family protein, expressed | K00855: PRK, phosphoribulokinase |
| 10 | Sobic.003G024300 | glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed | K05941: glutathione gamma-glutamylcysteinyltransferase |
| 11 | Sobic.001G329400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed | - |
| 12 | Sobic.004G125700 | isochorismatase family protein, putative, expressed | - |
| 13 | Sobic.006G244000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed | K17471: sulfate transporter 3 |
| 14 | Sobic.005G089600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed | K00696: sucrose-phosphate synthase |
| 15 | Sobic.010G201700 | GA16396-PA, putative, expressed | - |
| 16 | Sobic.007G161500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PGR5, putative, expressed | - |
| 17 | Sobic.003G367500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed | K03841: FBP, fructose-1,6-bisphosphatase I |
| 18 | Sobic.002G036000 | -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed | K11517: (S)-2-hydroxy-acid oxidase |
| 19 | Sobic.004G283100 | -(PubMedID : 26465154)@expressed protein | - |
| 20 | Sobic.004G035500 | -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed | K03319: divalent anion:Na+ symporter, DASS family |
Gene co-expression network
Octagon: transcription factors
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