Gene annotation
| Transcriptome id | Sobic.004G125700.2,Sobic.004G125700.1 |
|---|---|
| Synonym | Sb04g010650 |
| Functional annotation | isochorismatase family protein, putative, expressed |
| UniProt | A0A1Z5RM18 , A0A194YQC8 |
| Pfam | PF00857 |
| Panther DB | PTHR11080 |
| NCBI CDD | KOG4003; Pyrazinamidase/nicotinamidase PNC1 |
| KEGG Orthology | - |
| Gene Ontology | GO:0008152; metabolic process GO:0003824catalytic activity |
Orthologs (automatic annotation)
| TAIR | AT3G16190 : Isochorismatase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g17640.1 : isochorismatase family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a019796 |
| Brachypodium | KQJ94388 |
| Barley | HORVU3Hr1G038260.2 , HORVU3Hr1G038260.3 , HORVU7Hr1G025910.2 , HORVU7Hr1G025910.1 , HORVU7Hr1G025910.4 , HORVU4Hr1G043950.19 , HORVU4Hr1G043950.18 , HORVU4Hr1G043950.11 , HORVU4Hr1G043950.10 , HORVU4Hr1G043950.13 , HORVU4Hr1G043950.12 , HORVU4Hr1G043950.15 , HORVU4Hr1G043950.14 , HORVU4Hr1G043950.17 , HORVU4Hr1G043950.16 , HORVU4Hr1G043950.9 , HORVU4Hr1G043950.8 , HORVU4Hr1G043950.7 , HORVU4Hr1G043950.6 , HORVU4Hr1G043950.3 , HORVU4Hr1G043950.2 , HORVU4Hr1G043950.20 , HORVU4Hr1G043950.22 , HORVU4Hr1G043950.23 |
| Wheat | TraesCS7D02G121100 , TraesCS7B02G022000 , TraesCS7A02G122900 , TraesCS4D02G145000 |
| Populus | - |
JBrowse
| Sobic.004G125700 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G104800 | AMP deaminase, putative, expressed | K01490: AMP deaminase |
| 2 | Sobic.003G024300 | glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed | K05941: glutathione gamma-glutamylcysteinyltransferase |
| 3 | Sobic.007G140800 | Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed | K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase) |
| 4 | Sobic.001G329400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed | - |
| 5 | Sobic.006G077400 | PAP fibrillin family domain containing protein, expressed | - |
| 6 | Sobic.010G201700 | GA16396-PA, putative, expressed | - |
| 7 | Sobic.003G431900 | -(PubMedID : 26976818)@expressed protein | K07562: nonsense-mediated mRNA decay protein 3 |
| 8 | Sobic.006G244000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed | K17471: sulfate transporter 3 |
| 9 | Sobic.004G272100 | phosphoribulokinase/Uridine kinase family protein, expressed | K00855: PRK, phosphoribulokinase |
| 10 | Sobic.004G308700 | photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08911: light-harvesting complex I chlorophyll a/b binding protein 5 |
| 11 | Sobic.003G256700 | expressed protein | - |
| 12 | Sobic.006G008700 | bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed | K13811: 3'-phosphoadenosine 5'-phosphosulfate synthase |
| 13 | Sobic.007G009200 | adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed | K00939: adk, adenylate kinase |
| 14 | Sobic.010G095000 | kinase, pfkB family, putative, expressed | K00847: E2.7.1.4, fructokinase |
| 15 | Sobic.002G324500 | PPDK regulatory protein(PubMedID : 26465154)@PPDK regulatory protein(PubMedID : 26465154)@-(PubMedID : 26976818)@pyruvate orthophosphate dikinase regulatory protein(PubMedID : 27016024)@pyruvate Pi dikinase regulatory protein, putative, expressed | K09773: [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase |
| 16 | Sobic.002G036000 | -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed | K11517: (S)-2-hydroxy-acid oxidase |
| 17 | Sobic.009G125400 | FZL, putative, expressed | - |
| 18 | Sobic.002G098800 | peroxiredoxin, putative, expressed | - |
| 19 | Sobic.004G154200 | expressed protein | - |
| 20 | Sobic.008G053200 | fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed | K01623: fructose-bisphosphate aldolase, class I |
Gene co-expression network
Octagon: transcription factors
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