Gene annotation
| Transcriptome id | Sobic.009G104800.1,Sobic.009G104800.2 |
|---|---|
| Synonym | Sb09g016850, ATAMPD, FAC1 |
| Functional annotation | AMP deaminase, putative, expressed |
| UniProt | A0A1Z5R206 , C5YWD0 |
| Pfam | PF00962 |
| Panther DB | PTHR11359 PTHR11359:SF8 |
| NCBI CDD | - |
| KEGG Orthology | K01490; AMP deaminase |
| Gene Ontology | GO:0003876; AMP deaminase activity |
Orthologs (automatic annotation)
| TAIR | AT2G38280 : AMP deaminase, putative / myoadenylate deaminase, putative |
|---|---|
| RAP-DB (Rice) | LOC_Os07g49270.2,LOC_Os07g49270.1 : AMP deaminase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a043438 |
| Brachypodium | KQK06775 , KQK06774 , KQK06773 , KQK06772 |
| Barley | HORVU1Hr1G059810.14 , HORVU1Hr1G059810.15 , HORVU1Hr1G059810.10 , HORVU1Hr1G059810.11 , HORVU1Hr1G059810.12 , HORVU1Hr1G059810.13 , HORVU1Hr1G059810.8 , HORVU1Hr1G059810.9 , HORVU1Hr1G059810.6 , HORVU1Hr1G059810.7 , HORVU1Hr1G059810.4 , HORVU1Hr1G059810.5 , HORVU1Hr1G059810.2 , HORVU1Hr1G059810.3 , HORVU1Hr1G059810.1 |
| Wheat | TraesCS1D02G226400 , TraesCS1D02G226400 , TraesCS1B02G238200 , TraesCS1B02G238200 , TraesCS1A02G225000 , TraesCS1A02G225000 , TraesCS2B02G136700 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G125700 | isochorismatase family protein, putative, expressed | - |
| 2 | Sobic.003G024300 | glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed | K05941: glutathione gamma-glutamylcysteinyltransferase |
| 3 | Sobic.001G329400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed | - |
| 4 | Sobic.006G077400 | PAP fibrillin family domain containing protein, expressed | - |
| 5 | Sobic.006G244000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed | K17471: sulfate transporter 3 |
| 6 | Sobic.007G140800 | Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed | K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase) |
| 7 | Sobic.003G256700 | expressed protein | - |
| 8 | Sobic.007G161500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PGR5, putative, expressed | - |
| 9 | Sobic.010G095000 | kinase, pfkB family, putative, expressed | K00847: E2.7.1.4, fructokinase |
| 10 | Sobic.005G056400 | Fructose-bisphosphate aldolase(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Fructose-bisphosphate aldolase, putative (Os)"(PubMedID : 27208977)@fructose-bisphospate aldolase isozyme, putative, expressed | K01623: fructose-bisphosphate aldolase, class I |
| 11 | Sobic.003G431900 | -(PubMedID : 26976818)@expressed protein | K07562: nonsense-mediated mRNA decay protein 3 |
| 12 | Sobic.003G127800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 13 | Sobic.004G272100 | phosphoribulokinase/Uridine kinase family protein, expressed | K00855: PRK, phosphoribulokinase |
| 14 | Sobic.007G009200 | adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed | K00939: adk, adenylate kinase |
| 15 | Sobic.010G039500 | genetic modifier, putative, expressed | - |
| 16 | Sobic.010G201700 | GA16396-PA, putative, expressed | - |
| 17 | Sobic.002G324500 | PPDK regulatory protein(PubMedID : 26465154)@PPDK regulatory protein(PubMedID : 26465154)@-(PubMedID : 26976818)@pyruvate orthophosphate dikinase regulatory protein(PubMedID : 27016024)@pyruvate Pi dikinase regulatory protein, putative, expressed | K09773: [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase |
| 18 | Sobic.004G308700 | photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08911: light-harvesting complex I chlorophyll a/b binding protein 5 |
| 19 | Sobic.008G104601 | - | - |
| 20 | Sobic.003G234400 | CA(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed | K01673: cynT, carbonic anhydrase |
Gene co-expression network
Octagon: transcription factors
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