Gene annotation
Transcriptome id Sobic.010G201700.1,Sobic.010G201700.2
Synonym Sb10g024980
Functional annotation GA16396-PA, putative, expressed
UniProt C5Z6L4
Pfam PF01894
Panther DB PTHR30615 PTHR30615:SF1
NCBI CDD KOG3267; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G21065 : -
RAP-DB (Rice) LOC_Os06g43140.1 : GA16396-PA, putative, expressed
MaizeGDB (Corn) Zm00025a051429 , Zm00025a019350
Brachypodium KQK16734 , KQK16735 , PNT75324 , PNT75323
Barley HORVU7Hr1G116640.1 , HORVU7Hr1G116640.4 , HORVU7Hr1G116640.3 , HORVU7Hr1G116640.2
Wheat TraesCS7D02G514400 , TraesCS6B02G202600 , TraesCS6D02G163100 , TraesCS7B02G443200 , TraesCS6A02G174000 , TraesCS7A02G525400
Populus -


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cDNA sequences
Sobic.010G201700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G043000 thioredoxin, putative, expressed -
2 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
3 Sobic.003G002300 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed K15283: solute carrier family 35, member E1
4 Sobic.001G102800 expressed protein -
5 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
6 Sobic.007G225500 expressed protein -
7 Sobic.008G102000 Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed -
8 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
9 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
10 Sobic.002G051100 Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
11 Sobic.006G238200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
12 Sobic.004G305800 expressed protein -
13 Sobic.003G303700 Protein thylakoid membrane phosphoprotein 14 kda (Os)(PubMedID : 27208977)@expressed protein -
14 Sobic.001G100000 glucose-1-phosphate adenylyltransferase large subunit, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
15 Sobic.008G021300 Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed -
16 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
17 Sobic.007G140800 Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase)
18 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase
19 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
20 Sobic.002G275300 deoxyribodipyrimidine photolyase family protein, expressed -


Gene co-expression network
sample Sobic010G201700 Sobic010G201700 Sobic009G043000 Sobic009G043000 Sobic010G201700--Sobic009G043000 Sobic004G272100 Sobic004G272100 Sobic010G201700--Sobic004G272100 Sobic003G002300 Sobic003G002300 Sobic010G201700--Sobic003G002300 Sobic001G102800 Sobic001G102800 Sobic010G201700--Sobic001G102800 Sobic001G519800 Sobic001G519800 Sobic010G201700--Sobic001G519800 Sobic007G225500 Sobic007G225500 Sobic010G201700--Sobic007G225500 Sobic008G102000 Sobic008G102000 Sobic010G201700--Sobic008G102000 Sobic006G207800 Sobic006G207800 Sobic010G201700--Sobic006G207800 Sobic004G308700 Sobic004G308700 Sobic010G201700--Sobic004G308700 Sobic009G043000--Sobic010G201700 Sobic009G043000--Sobic003G002300 Sobic009G043000--Sobic008G102000 Sobic009G043000--Sobic001G102800 Sobic009G043000--Sobic007G225500 Sobic009G043000--Sobic004G272100 Sobic009G043000--Sobic006G207800 Sobic009G140600 Sobic009G140600 Sobic009G043000--Sobic009G140600 Sobic009G043000--Sobic001G519800 Sobic004G272100--Sobic004G308700 Sobic004G272100--Sobic010G201700 Sobic004G272100--Sobic001G519800 Sobic002G051100 Sobic002G051100 Sobic004G272100--Sobic002G051100 Sobic004G272100--Sobic003G002300 Sobic004G272100--Sobic008G102000 Sobic004G272100--Sobic009G043000 Sobic004G272100--Sobic001G102800 Sobic008G066100 Sobic008G066100 Sobic004G272100--Sobic008G066100 Sobic007G052400 Sobic007G052400 Sobic003G002300--Sobic007G052400 Sobic003G002300--Sobic007G225500 Sobic003G002300--Sobic009G140600 Sobic003G002300--Sobic009G043000 Sobic003G002300--Sobic008G102000 Sobic003G002300--Sobic002G051100 Sobic003G002300--Sobic010G201700 Sobic003G002300--Sobic001G519800 Sobic010G005500 Sobic010G005500 Sobic003G002300--Sobic010G005500 Sobic001G102800--Sobic006G207800 Sobic001G102800--Sobic001G519800 Sobic001G102800--Sobic003G002300 Sobic001G102800--Sobic010G201700 Sobic001G102800--Sobic009G043000 Sobic001G102800--Sobic004G272100 Sobic007G009200 Sobic007G009200 Sobic001G102800--Sobic007G009200 Sobic001G102800--Sobic007G052400 Sobic003G431700 Sobic003G431700 Sobic001G102800--Sobic003G431700 Sobic001G519800--Sobic004G272100 Sobic001G519800--Sobic001G102800 Sobic001G519800--Sobic003G002300 Sobic001G519800--Sobic002G051100 Sobic001G519800--Sobic003G431700 Sobic001G519800--Sobic010G201700 Sobic001G519800--Sobic004G308700 Sobic007G004800 Sobic007G004800 Sobic001G519800--Sobic007G004800 Sobic008G053200 Sobic008G053200 Sobic001G519800--Sobic008G053200 Sobic007G225500--Sobic003G002300 Sobic010G035400 Sobic010G035400 Sobic007G225500--Sobic010G035400 Sobic007G225500--Sobic008G102000 Sobic007G225500--Sobic007G052400 Sobic008G171300 Sobic008G171300 Sobic007G225500--Sobic008G171300 Sobic007G225500--Sobic009G043000 Sobic002G275300 Sobic002G275300 Sobic007G225500--Sobic002G275300 Sobic006G077400 Sobic006G077400 Sobic007G225500--Sobic006G077400 Sobic007G225500--Sobic010G201700 Sobic008G102000--Sobic003G002300 Sobic008G102000--Sobic009G140600 Sobic008G102000--Sobic009G043000 Sobic008G102000--Sobic007G225500 Sobic008G102000--Sobic002G051100 Sobic008G102000--Sobic004G272100 Sobic007G173800 Sobic007G173800 Sobic008G102000--Sobic007G173800 Sobic008G102000--Sobic007G052400 Sobic003G378600 Sobic003G378600 Sobic008G102000--Sobic003G378600 Sobic006G207800--Sobic001G102800 Sobic009G237100 Sobic009G237100 Sobic006G207800--Sobic009G237100 Sobic006G207800--Sobic007G009200 Sobic003G387100 Sobic003G387100 Sobic006G207800--Sobic003G387100 Sobic006G207800--Sobic009G043000 Sobic006G207800--Sobic010G035400 Sobic006G207800--Sobic003G431700 Sobic006G207800--Sobic010G201700 Sobic006G238200 Sobic006G238200 Sobic006G207800--Sobic006G238200 Sobic004G308700--Sobic004G272100 Sobic004G308700--Sobic008G066100 Sobic004G308700--Sobic001G519800 Sobic004G308700--Sobic010G201700 Sobic001G425400 Sobic001G425400 Sobic004G308700--Sobic001G425400 Sobic004G308700--Sobic003G431700 Sobic004G308700--Sobic001G102800 Sobic004G308700--Sobic007G004800 Sobic004G308700--Sobic002G051100
Octagon: transcription factors


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