Gene annotation
Transcriptome id Sobic.001G100000.2,Sobic.001G100000.1
Synonym APL1, ADG2, Sb01g008940
Functional annotation glucose-1-phosphate adenylyltransferase large subunit, putative, expressed
UniProt A0A1Z5S5D7 , C5WLV9
Pfam PF00483
Panther DB PTHR22572 PTHR22572:SF119
NCBI CDD KOG1322; GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase
KEGG Orthology K00975; glucose-1-phosphate adenylyltransferase
Gene Ontology GO:0016779; nucleotidyltransferase activity GO:0009058biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G19220 : ADP glucose pyrophosphorylase large subunit 1
RAP-DB (Rice) LOC_Os03g52460.1 : glucose-1-phosphate adenylyltransferase large subunit, putative, expressed
MaizeGDB (Corn) Zm00025a008034
Brachypodium KQJ89760 , KQK13346 , KQJ89759 , KQJ89758
Barley HORVU4Hr1G025240.1 , HORVU6Hr1G033630.33 , HORVU6Hr1G033630.32 , HORVU6Hr1G033630.31 , HORVU6Hr1G033630.30 , HORVU6Hr1G033630.37 , HORVU6Hr1G033630.36 , HORVU6Hr1G033630.35 , HORVU6Hr1G033630.34 , HORVU6Hr1G033630.39 , HORVU6Hr1G033630.38 , HORVU5Hr1G007240.2 , HORVU5Hr1G007240.3 , HORVU5Hr1G007240.4 , HORVU6Hr1G033630.20 , HORVU6Hr1G033630.21 , HORVU6Hr1G033630.22 , HORVU6Hr1G033630.23 , HORVU6Hr1G033630.25 , HORVU6Hr1G033630.26 , HORVU6Hr1G033630.27 , HORVU6Hr1G033630.28 , HORVU6Hr1G033630.29 , HORVU0Hr1G033200.2 , HORVU0Hr1G033200.1 , HORVU1Hr1G001590.2 , HORVU1Hr1G001590.3 , HORVU1Hr1G001590.5 , HORVU6Hr1G033630.1 , HORVU6Hr1G033630.3 , HORVU6Hr1G033630.2 , HORVU6Hr1G033630.5 , HORVU6Hr1G033630.4 , HORVU6Hr1G033630.7 , HORVU6Hr1G033630.6 , HORVU6Hr1G033630.9 , HORVU6Hr1G033630.8 , HORVU6Hr1G033630.15 , HORVU6Hr1G033630.14 , HORVU6Hr1G033630.17 , HORVU6Hr1G033630.16 , HORVU6Hr1G033630.11 , HORVU6Hr1G033630.10 , HORVU6Hr1G033630.13 , HORVU6Hr1G033630.12 , HORVU6Hr1G033630.19 , HORVU6Hr1G033630.18 , HORVU3Hr1G023370.4 , HORVU3Hr1G023370.5 , HORVU3Hr1G023370.6 , HORVU3Hr1G023370.1 , HORVU3Hr1G023370.2 , HORVU3Hr1G023370.3 , HORVU7Hr1G093330.2 , HORVU7Hr1G093330.1 , HORVU4Hr1G025250.2 , HORVU4Hr1G025250.1 , HORVU0Hr1G014150.8 , HORVU0Hr1G014150.5 , HORVU0Hr1G014150.4 , HORVU0Hr1G014150.7 , HORVU0Hr1G014150.6 , HORVU0Hr1G014150.1 , HORVU0Hr1G014150.3 , HORVU0Hr1G014150.2 , HORVU6Hr1G033630.51 , HORVU6Hr1G033630.50 , HORVU6Hr1G033630.53 , HORVU6Hr1G033630.52 , HORVU6Hr1G033630.46 , HORVU6Hr1G033630.47 , HORVU6Hr1G033630.44 , HORVU6Hr1G033630.45 , HORVU6Hr1G033630.42 , HORVU6Hr1G033630.43 , HORVU6Hr1G033630.40 , HORVU6Hr1G033630.41 , HORVU6Hr1G033630.48 , HORVU6Hr1G033630.49
Wheat TraesCS5A02G472000 , TraesCS5D02G484500 , TraesCS5B02G484700 , TraesCS5D02G484500
Populus -


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cDNA sequences
Sobic.001G100000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
2 Sobic.006G238200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
3 Sobic.009G237100 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
4 Sobic.002G275300 deoxyribodipyrimidine photolyase family protein, expressed -
5 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
6 Sobic.010G201700 GA16396-PA, putative, expressed -
7 Sobic.010G181300 SOUL heme-binding protein, putative, expressed -
8 Sobic.001G289500 kinase, pfkB family, putative, expressed -
9 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
10 Sobic.006G102000 PAP fibrillin family domain containing protein, expressed -
11 Sobic.001G102800 expressed protein -
12 Sobic.002G370600 - -
13 Sobic.006G130300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
14 Sobic.007G225500 expressed protein -
15 Sobic.004G305800 expressed protein -
16 Sobic.007G173800 uncharacterized protein ycf39, putative, expressed -
17 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
18 Sobic.009G129300 heat shock protein DnaJ, putative, expressed -
19 Sobic.009G043000 thioredoxin, putative, expressed -
20 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase


Gene co-expression network
sample Sobic001G100000 Sobic001G100000 Sobic001G491000 Sobic001G491000 Sobic001G100000--Sobic001G491000 Sobic006G238200 Sobic006G238200 Sobic001G100000--Sobic006G238200 Sobic009G237100 Sobic009G237100 Sobic001G100000--Sobic009G237100 Sobic002G275300 Sobic002G275300 Sobic001G100000--Sobic002G275300 Sobic006G207800 Sobic006G207800 Sobic001G100000--Sobic006G207800 Sobic010G201700 Sobic010G201700 Sobic001G100000--Sobic010G201700 Sobic010G181300 Sobic010G181300 Sobic001G100000--Sobic010G181300 Sobic001G289500 Sobic001G289500 Sobic001G100000--Sobic001G289500 Sobic004G272100 Sobic004G272100 Sobic001G100000--Sobic004G272100 Sobic001G491000--Sobic006G238200 Sobic001G491000--Sobic010G181300 Sobic001G491000--Sobic001G100000 Sobic001G491000--Sobic002G275300 Sobic001G491000--Sobic001G289500 Sobic009G129300 Sobic009G129300 Sobic001G491000--Sobic009G129300 Sobic002G370600 Sobic002G370600 Sobic001G491000--Sobic002G370600 Sobic001G491000--Sobic009G237100 Sobic004G305800 Sobic004G305800 Sobic001G491000--Sobic004G305800 Sobic006G238200--Sobic001G491000 Sobic006G238200--Sobic002G275300 Sobic006G238200--Sobic010G181300 Sobic006G238200--Sobic001G100000 Sobic006G238200--Sobic009G237100 Sobic003G398800 Sobic003G398800 Sobic006G238200--Sobic003G398800 Sobic006G238200--Sobic001G289500 Sobic006G238200--Sobic002G370600 Sobic007G225500 Sobic007G225500 Sobic006G238200--Sobic007G225500 Sobic007G009200 Sobic007G009200 Sobic009G237100--Sobic007G009200 Sobic009G237100--Sobic006G207800 Sobic009G237100--Sobic006G238200 Sobic009G237100--Sobic001G100000 Sobic009G237100--Sobic001G491000 Sobic009G237100--Sobic002G275300 Sobic010G035400 Sobic010G035400 Sobic009G237100--Sobic010G035400 Sobic001G102800 Sobic001G102800 Sobic009G237100--Sobic001G102800 Sobic009G237100--Sobic010G181300 Sobic002G275300--Sobic006G238200 Sobic002G275300--Sobic010G181300 Sobic002G275300--Sobic001G491000 Sobic002G298800 Sobic002G298800 Sobic002G275300--Sobic002G298800 Sobic007G108900 Sobic007G108900 Sobic002G275300--Sobic007G108900 Sobic002G275300--Sobic007G225500 Sobic007G103400 Sobic007G103400 Sobic002G275300--Sobic007G103400 Sobic002G275300--Sobic010G035400 Sobic003G306200 Sobic003G306200 Sobic002G275300--Sobic003G306200 Sobic006G207800--Sobic001G102800 Sobic006G207800--Sobic009G237100 Sobic006G207800--Sobic007G009200 Sobic003G387100 Sobic003G387100 Sobic006G207800--Sobic003G387100 Sobic009G043000 Sobic009G043000 Sobic006G207800--Sobic009G043000 Sobic006G207800--Sobic010G035400 Sobic003G431700 Sobic003G431700 Sobic006G207800--Sobic003G431700 Sobic006G207800--Sobic010G201700 Sobic006G207800--Sobic006G238200 Sobic010G201700--Sobic009G043000 Sobic010G201700--Sobic004G272100 Sobic003G002300 Sobic003G002300 Sobic010G201700--Sobic003G002300 Sobic010G201700--Sobic001G102800 Sobic001G519800 Sobic001G519800 Sobic010G201700--Sobic001G519800 Sobic010G201700--Sobic007G225500 Sobic008G102000 Sobic008G102000 Sobic010G201700--Sobic008G102000 Sobic010G201700--Sobic006G207800 Sobic004G308700 Sobic004G308700 Sobic010G201700--Sobic004G308700 Sobic010G181300--Sobic001G491000 Sobic010G181300--Sobic002G275300 Sobic010G181300--Sobic006G238200 Sobic010G181300--Sobic007G108900 Sobic010G181300--Sobic009G129300 Sobic010G181300--Sobic001G289500 Sobic006G102000 Sobic006G102000 Sobic010G181300--Sobic006G102000 Sobic010G181300--Sobic002G370600 Sobic010G181300--Sobic003G398800 Sobic003G005000 Sobic003G005000 Sobic001G289500--Sobic003G005000 Sobic001G289500--Sobic001G491000 Sobic004G202200 Sobic004G202200 Sobic001G289500--Sobic004G202200 Sobic001G289500--Sobic006G238200 Sobic001G289500--Sobic006G102000 Sobic001G289500--Sobic010G181300 Sobic001G289500--Sobic007G108900 Sobic003G094100 Sobic003G094100 Sobic001G289500--Sobic003G094100 Sobic001G289500--Sobic002G275300 Sobic004G272100--Sobic004G308700 Sobic004G272100--Sobic010G201700 Sobic004G272100--Sobic001G519800 Sobic002G051100 Sobic002G051100 Sobic004G272100--Sobic002G051100 Sobic004G272100--Sobic003G002300 Sobic004G272100--Sobic008G102000 Sobic004G272100--Sobic009G043000 Sobic004G272100--Sobic001G102800 Sobic008G066100 Sobic008G066100 Sobic004G272100--Sobic008G066100
Octagon: transcription factors


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