Gene annotation
Transcriptome id Sobic.006G238200.1,Sobic.006G238200.2
Synonym Sb06g030510
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
hydrolase, alpha/beta fold family domain containing protein, expressed
UniProt C5Y910 , A0A1B6PNK3
Pfam PF12146 PF12697
Panther DB PTHR10992 PTHR10992:SF730
NCBI CDD KOG1454; Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G52510 : alpha/beta-Hydrolases superfamily protein
RAP-DB (Rice) LOC_Os04g55180.2,LOC_Os04g55180.1 : hydrolase, alpha/beta fold family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a057191
Brachypodium KQJ84926
Barley HORVU2Hr1G114720.9 , HORVU2Hr1G114720.8 , HORVU2Hr1G114720.7 , HORVU2Hr1G114720.4 , HORVU2Hr1G114720.3 , HORVU2Hr1G114720.2 , HORVU2Hr1G114720.17 , HORVU2Hr1G114720.16 , HORVU2Hr1G114720.15 , HORVU2Hr1G114720.14 , HORVU2Hr1G114720.13 , HORVU2Hr1G114720.12 , HORVU2Hr1G114720.11 , HORVU2Hr1G114720.10
Wheat TraesCS2A02G517900 , TraesCS2A02G517900 , TraesCS2A02G517900 , TraesCS2B02G546500 , TraesCS2B02G546500 , TraesCS2D02G519500 , TraesCS2D02G519500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G238200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
2 Sobic.002G275300 deoxyribodipyrimidine photolyase family protein, expressed -
3 Sobic.010G181300 SOUL heme-binding protein, putative, expressed -
4 Sobic.001G100000 glucose-1-phosphate adenylyltransferase large subunit, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
5 Sobic.009G237100 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
6 Sobic.003G398800 expressed protein -
7 Sobic.001G289500 kinase, pfkB family, putative, expressed -
8 Sobic.002G370600 - -
9 Sobic.007G225500 expressed protein -
10 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
11 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
12 Sobic.010G035400 expressed protein -
13 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase
14 Sobic.007G108900 APE1, putative, expressed -
15 Sobic.010G201700 GA16396-PA, putative, expressed -
16 Sobic.007G103400 expressed protein -
17 Sobic.009G129300 heat shock protein DnaJ, putative, expressed -
18 Sobic.002G298800 PAP fibrillin family domain containing protein, expressed -
19 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.006G102000 PAP fibrillin family domain containing protein, expressed -


Gene co-expression network
sample Sobic006G238200 Sobic006G238200 Sobic001G491000 Sobic001G491000 Sobic006G238200--Sobic001G491000 Sobic002G275300 Sobic002G275300 Sobic006G238200--Sobic002G275300 Sobic010G181300 Sobic010G181300 Sobic006G238200--Sobic010G181300 Sobic001G100000 Sobic001G100000 Sobic006G238200--Sobic001G100000 Sobic009G237100 Sobic009G237100 Sobic006G238200--Sobic009G237100 Sobic003G398800 Sobic003G398800 Sobic006G238200--Sobic003G398800 Sobic001G289500 Sobic001G289500 Sobic006G238200--Sobic001G289500 Sobic002G370600 Sobic002G370600 Sobic006G238200--Sobic002G370600 Sobic007G225500 Sobic007G225500 Sobic006G238200--Sobic007G225500 Sobic001G491000--Sobic006G238200 Sobic001G491000--Sobic010G181300 Sobic001G491000--Sobic001G100000 Sobic001G491000--Sobic002G275300 Sobic001G491000--Sobic001G289500 Sobic009G129300 Sobic009G129300 Sobic001G491000--Sobic009G129300 Sobic001G491000--Sobic002G370600 Sobic001G491000--Sobic009G237100 Sobic004G305800 Sobic004G305800 Sobic001G491000--Sobic004G305800 Sobic002G275300--Sobic006G238200 Sobic002G275300--Sobic010G181300 Sobic002G275300--Sobic001G491000 Sobic002G298800 Sobic002G298800 Sobic002G275300--Sobic002G298800 Sobic007G108900 Sobic007G108900 Sobic002G275300--Sobic007G108900 Sobic002G275300--Sobic007G225500 Sobic007G103400 Sobic007G103400 Sobic002G275300--Sobic007G103400 Sobic010G035400 Sobic010G035400 Sobic002G275300--Sobic010G035400 Sobic003G306200 Sobic003G306200 Sobic002G275300--Sobic003G306200 Sobic010G181300--Sobic001G491000 Sobic010G181300--Sobic002G275300 Sobic010G181300--Sobic006G238200 Sobic010G181300--Sobic007G108900 Sobic010G181300--Sobic009G129300 Sobic010G181300--Sobic001G289500 Sobic006G102000 Sobic006G102000 Sobic010G181300--Sobic006G102000 Sobic010G181300--Sobic002G370600 Sobic010G181300--Sobic003G398800 Sobic001G100000--Sobic001G491000 Sobic001G100000--Sobic006G238200 Sobic001G100000--Sobic009G237100 Sobic001G100000--Sobic002G275300 Sobic006G207800 Sobic006G207800 Sobic001G100000--Sobic006G207800 Sobic010G201700 Sobic010G201700 Sobic001G100000--Sobic010G201700 Sobic001G100000--Sobic010G181300 Sobic001G100000--Sobic001G289500 Sobic004G272100 Sobic004G272100 Sobic001G100000--Sobic004G272100 Sobic007G009200 Sobic007G009200 Sobic009G237100--Sobic007G009200 Sobic009G237100--Sobic006G207800 Sobic009G237100--Sobic006G238200 Sobic009G237100--Sobic001G100000 Sobic009G237100--Sobic001G491000 Sobic009G237100--Sobic002G275300 Sobic009G237100--Sobic010G035400 Sobic001G102800 Sobic001G102800 Sobic009G237100--Sobic001G102800 Sobic009G237100--Sobic010G181300 Sobic003G398800--Sobic006G238200 Sobic003G398800--Sobic003G306200 Sobic009G056700 Sobic009G056700 Sobic003G398800--Sobic009G056700 Sobic003G398800--Sobic007G009200 Sobic003G398800--Sobic007G103400 Sobic003G398800--Sobic009G129300 Sobic002G220900 Sobic002G220900 Sobic003G398800--Sobic002G220900 Sobic003G431700 Sobic003G431700 Sobic003G398800--Sobic003G431700 Sobic003G398800--Sobic001G491000 Sobic003G005000 Sobic003G005000 Sobic001G289500--Sobic003G005000 Sobic001G289500--Sobic001G491000 Sobic004G202200 Sobic004G202200 Sobic001G289500--Sobic004G202200 Sobic001G289500--Sobic006G238200 Sobic001G289500--Sobic006G102000 Sobic001G289500--Sobic010G181300 Sobic001G289500--Sobic007G108900 Sobic003G094100 Sobic003G094100 Sobic001G289500--Sobic003G094100 Sobic001G289500--Sobic002G275300 Sobic002G370600--Sobic004G305800 Sobic002G370600--Sobic001G491000 Sobic002G370600--Sobic010G181300 Sobic002G370600--Sobic006G238200 Sobic010G245200 Sobic010G245200 Sobic002G370600--Sobic010G245200 Sobic002G370600--Sobic003G431700 Sobic002G370600--Sobic001G289500 Sobic003G370000 Sobic003G370000 Sobic002G370600--Sobic003G370000 Sobic009G043000 Sobic009G043000 Sobic002G370600--Sobic009G043000 Sobic003G002300 Sobic003G002300 Sobic007G225500--Sobic003G002300 Sobic007G225500--Sobic010G035400 Sobic008G102000 Sobic008G102000 Sobic007G225500--Sobic008G102000 Sobic007G052400 Sobic007G052400 Sobic007G225500--Sobic007G052400 Sobic008G171300 Sobic008G171300 Sobic007G225500--Sobic008G171300 Sobic007G225500--Sobic009G043000 Sobic007G225500--Sobic002G275300 Sobic006G077400 Sobic006G077400 Sobic007G225500--Sobic006G077400 Sobic007G225500--Sobic010G201700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.