Gene annotation
Transcriptome id Sobic.006G207800.1
Synonym Sb06g027870
Functional annotation Plastid-lipid associated protein PAP / fibrillin family protein (PubMedID : 26465154)
PAP fibrillin family domain containing protein, expressed
UniProt C5YFJ8
Pfam PF04755
Panther DB PTHR31906 PTHR31906:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G19940 : Plastid-lipid associated protein PAP / fibrillin family protein
RAP-DB (Rice) LOC_Os04g51792.1 : PAP fibrillin family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009870
Brachypodium KQJ84452
Barley -
Wheat TraesCS2A02G431000 , TraesCS2B02G452300 , TraesCS2D02G428800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G207800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G102800 expressed protein -
2 Sobic.009G237100 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
3 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase
4 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
5 Sobic.009G043000 thioredoxin, putative, expressed -
6 Sobic.010G035400 expressed protein -
7 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
8 Sobic.010G201700 GA16396-PA, putative, expressed -
9 Sobic.006G238200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
10 Sobic.006G102000 PAP fibrillin family domain containing protein, expressed -
11 Sobic.009G059300 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
12 Sobic.001G100000 glucose-1-phosphate adenylyltransferase large subunit, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
13 Sobic.007G225500 expressed protein -
14 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
15 Sobic.003G002300 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed K15283: solute carrier family 35, member E1
16 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
17 Sobic.010G181300 SOUL heme-binding protein, putative, expressed -
18 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
19 Sobic.004G331700 aspartate aminotransferase 5(PubMedID : 26465154)@-(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed K00811: aspartate aminotransferase, chloroplastic
20 Sobic.009G237000 OsDegp9 - Putative Deg protease homologue, expressed -


Gene co-expression network
sample Sobic006G207800 Sobic006G207800 Sobic001G102800 Sobic001G102800 Sobic006G207800--Sobic001G102800 Sobic009G237100 Sobic009G237100 Sobic006G207800--Sobic009G237100 Sobic007G009200 Sobic007G009200 Sobic006G207800--Sobic007G009200 Sobic003G387100 Sobic003G387100 Sobic006G207800--Sobic003G387100 Sobic009G043000 Sobic009G043000 Sobic006G207800--Sobic009G043000 Sobic010G035400 Sobic010G035400 Sobic006G207800--Sobic010G035400 Sobic003G431700 Sobic003G431700 Sobic006G207800--Sobic003G431700 Sobic010G201700 Sobic010G201700 Sobic006G207800--Sobic010G201700 Sobic006G238200 Sobic006G238200 Sobic006G207800--Sobic006G238200 Sobic001G102800--Sobic006G207800 Sobic001G519800 Sobic001G519800 Sobic001G102800--Sobic001G519800 Sobic003G002300 Sobic003G002300 Sobic001G102800--Sobic003G002300 Sobic001G102800--Sobic010G201700 Sobic001G102800--Sobic009G043000 Sobic004G272100 Sobic004G272100 Sobic001G102800--Sobic004G272100 Sobic001G102800--Sobic007G009200 Sobic007G052400 Sobic007G052400 Sobic001G102800--Sobic007G052400 Sobic001G102800--Sobic003G431700 Sobic009G237100--Sobic007G009200 Sobic009G237100--Sobic006G207800 Sobic009G237100--Sobic006G238200 Sobic001G100000 Sobic001G100000 Sobic009G237100--Sobic001G100000 Sobic001G491000 Sobic001G491000 Sobic009G237100--Sobic001G491000 Sobic002G275300 Sobic002G275300 Sobic009G237100--Sobic002G275300 Sobic009G237100--Sobic010G035400 Sobic009G237100--Sobic001G102800 Sobic010G181300 Sobic010G181300 Sobic009G237100--Sobic010G181300 Sobic007G009200--Sobic009G237100 Sobic003G024300 Sobic003G024300 Sobic007G009200--Sobic003G024300 Sobic007G009200--Sobic006G207800 Sobic003G398800 Sobic003G398800 Sobic007G009200--Sobic003G398800 Sobic007G009200--Sobic006G238200 Sobic007G009200--Sobic001G102800 Sobic006G077400 Sobic006G077400 Sobic007G009200--Sobic006G077400 Sobic007G009200--Sobic010G201700 Sobic007G009200--Sobic010G035400 Sobic009G059300 Sobic009G059300 Sobic003G387100--Sobic009G059300 Sobic004G336200 Sobic004G336200 Sobic003G387100--Sobic004G336200 Sobic008G073100 Sobic008G073100 Sobic003G387100--Sobic008G073100 Sobic003G387100--Sobic006G207800 Sobic003G160800 Sobic003G160800 Sobic003G387100--Sobic003G160800 Sobic005G110400 Sobic005G110400 Sobic003G387100--Sobic005G110400 Sobic004G012900 Sobic004G012900 Sobic003G387100--Sobic004G012900 Sobic003G412900 Sobic003G412900 Sobic003G387100--Sobic003G412900 Sobic003G387100--Sobic010G035400 Sobic009G043000--Sobic010G201700 Sobic009G043000--Sobic003G002300 Sobic008G102000 Sobic008G102000 Sobic009G043000--Sobic008G102000 Sobic009G043000--Sobic001G102800 Sobic007G225500 Sobic007G225500 Sobic009G043000--Sobic007G225500 Sobic009G043000--Sobic004G272100 Sobic009G043000--Sobic006G207800 Sobic009G140600 Sobic009G140600 Sobic009G043000--Sobic009G140600 Sobic009G043000--Sobic001G519800 Sobic007G103400 Sobic007G103400 Sobic010G035400--Sobic007G103400 Sobic010G035400--Sobic007G225500 Sobic010G035400--Sobic004G336200 Sobic004G353100 Sobic004G353100 Sobic010G035400--Sobic004G353100 Sobic009G237000 Sobic009G237000 Sobic010G035400--Sobic009G237000 Sobic010G035400--Sobic002G275300 Sobic010G035400--Sobic003G160800 Sobic010G035400--Sobic006G207800 Sobic010G035400--Sobic003G387100 Sobic003G431700--Sobic001G519800 Sobic003G431700--Sobic003G398800 Sobic003G431700--Sobic006G207800 Sobic002G370600 Sobic002G370600 Sobic003G431700--Sobic002G370600 Sobic003G431700--Sobic006G238200 Sobic004G308700 Sobic004G308700 Sobic003G431700--Sobic004G308700 Sobic003G431700--Sobic004G272100 Sobic003G431700--Sobic010G181300 Sobic003G431700--Sobic001G102800 Sobic010G201700--Sobic009G043000 Sobic010G201700--Sobic004G272100 Sobic010G201700--Sobic003G002300 Sobic010G201700--Sobic001G102800 Sobic010G201700--Sobic001G519800 Sobic010G201700--Sobic007G225500 Sobic010G201700--Sobic008G102000 Sobic010G201700--Sobic006G207800 Sobic010G201700--Sobic004G308700 Sobic006G238200--Sobic001G491000 Sobic006G238200--Sobic002G275300 Sobic006G238200--Sobic010G181300 Sobic006G238200--Sobic001G100000 Sobic006G238200--Sobic009G237100 Sobic006G238200--Sobic003G398800 Sobic001G289500 Sobic001G289500 Sobic006G238200--Sobic001G289500 Sobic006G238200--Sobic002G370600 Sobic006G238200--Sobic007G225500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.