Gene annotation
| Transcriptome id | Sobic.008G021300.1 |
|---|---|
| Synonym | Sb08g001890, |
| Functional annotation | Unnamed (PubMedID : 24676859) SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) FHA domain containing protein, putative, expressed |
| UniProt | C5YR18 |
| Pfam | PF00498 |
| Panther DB | PTHR23308 PTHR23308:SF29 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0005515; protein binding |
Orthologs (automatic annotation)
| TAIR | AT2G21530 : SMAD/FHA domain-containing protein |
|---|---|
| RAP-DB (Rice) | LOC_Os12g03070.2 : FHA domain containing protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a029000 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.008G021300 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G303700 | Protein thylakoid membrane phosphoprotein 14 kda (Os)(PubMedID : 27208977)@expressed protein | - |
| 2 | Sobic.002G152700 | rhodanese-like, putative, expressed | - |
| 3 | Sobic.007G004800 | Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | K02639: ferredoxin |
| 4 | Sobic.006G272900 | peroxidase activity(PubMedID : 29491869)@glutathione peroxidase, putative, expressed | K00432: gpx, btuE, glutathione peroxidase |
| 5 | Sobic.004G035500 | -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed | K03319: divalent anion:Na+ symporter, DASS family |
| 6 | Sobic.010G201700 | GA16396-PA, putative, expressed | - |
| 7 | Sobic.001G519800 | glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 8 | Sobic.001G102800 | expressed protein | - |
| 9 | Sobic.009G043000 | thioredoxin, putative, expressed | - |
| 10 | Sobic.004G272100 | phosphoribulokinase/Uridine kinase family protein, expressed | K00855: PRK, phosphoribulokinase |
| 11 | Sobic.002G098800 | peroxiredoxin, putative, expressed | - |
| 12 | Sobic.003G002300 | Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed | K15283: solute carrier family 35, member E1 |
| 13 | Sobic.003G387800 | unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed | - |
| 14 | Sobic.004G249800 | expressed protein | - |
| 15 | Sobic.004G343300 | -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein | - |
| 16 | Sobic.009G125400 | FZL, putative, expressed | - |
| 17 | Sobic.002G051100 | Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed | K01807: ribose 5-phosphate isomerase A |
| 18 | Sobic.004G023200 | Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed | - |
| 19 | Sobic.010G005500 | ferredoxin--NADP reductase, chloroplast precursor, putative, expressed | K02641: ferredoxin--NADP+ reductase |
| 20 | Sobic.009G030900 | bundle sheath defective protein 2, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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