Gene annotation
| Transcriptome id | Sobic.004G023200.1 |
|---|---|
| Synonym | CP5, Sb04g002070 |
| Functional annotation | Polyketide cyclase/dehydrase and lipid transport superfamily protein (PubMedID : 26465154) membrane related protein CP5, putative, expressed |
| UniProt | C5XT54 |
| Pfam | - |
| Panther DB | PTHR19308 PTHR19308:SF11 |
| NCBI CDD | KOG2761; START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G64720 : Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g03230.1 : membrane related protein CP5, putative, expressed |
| MaizeGDB (Corn) | Zm00025a018787 , Zm00025a034949 |
| Brachypodium | KQJ93047 |
| Barley | - |
| Wheat | TraesCS6A02G082400 , TraesCS2D02G010800 , TraesCS2B02G012600 , TraesCS2B02G012600 , TraesCS2A02G010200 , TraesCS2A02G010200 , TraesCS6D02G075400 , TraesCS6D02G075400 , TraesCS6B02G109400 |
| Populus | - |
JBrowse
| Sobic.004G023200 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G033800 | expressed protein | - |
| 2 | Sobic.004G343300 | -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein | - |
| 3 | Sobic.006G103400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 4 | Sobic.001G448400 | UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed | - |
| 5 | Sobic.004G249800 | expressed protein | - |
| 6 | Sobic.006G234100 | shikimate/quinate 5-dehydrogenase, putative, expressed | K02492: glutamyl-tRNA reductase |
| 7 | Sobic.010G109500 | expressed protein | - |
| 8 | Sobic.003G132100 | magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed | K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase |
| 9 | Sobic.004G035500 | -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed | K03319: divalent anion:Na+ symporter, DASS family |
| 10 | Sobic.008G021300 | Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed | - |
| 11 | Sobic.007G171600 | Ser/Thr protein phosphatase family protein, putative, expressed | K01517: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase |
| 12 | Sobic.010G276400 | "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed | K02291: 15-cis-phytoene synthase |
| 13 | Sobic.002G180400 | isochorismate synthase 1, chloroplast precursor, putative, expressed | K02552: menaquinone-specific isochorismate synthase |
| 14 | Sobic.002G152700 | rhodanese-like, putative, expressed | - |
| 15 | Sobic.007G071500 | photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed | K03541: photosystem II 10kDa protein |
| 16 | Sobic.002G098800 | peroxiredoxin, putative, expressed | - |
| 17 | Sobic.003G052500 | Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed | K02699: photosystem I subunit XI |
| 18 | Sobic.001G338700 | tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed | - |
| 19 | Sobic.002G000500 | isoflavone reductase, putative, expressed | - |
| 20 | Sobic.001G379700 | uroporphyrinogen decarboxylase, putative, expressed | K01599: hemE, uroporphyrinogen decarboxylase |
Gene co-expression network
Octagon: transcription factors
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